Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq3 109 1e-18 >seq3 Length=365885 Score = 109 bits (120), Expect = 1e-18 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 135753 TATTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCT 135812 ||||| |||||| |||||| ||||| || |||| | |||||||||||||| | | | Sbjct 70630 TATTGCAAGAGCTTGGGATTTCAACAAGCCTATCATAGTTTGTCCTGCAATGAACAATTT 70689 Query 135813 TATGTGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATATATGGGTTTCAT 135872 ||||||||||||||| ||||| || ||| ||||| || |||||| | | |||| | Sbjct 70690 TATGTGGGAACATCCGATTACTTTAAGACAAATAGACACTCTAAAATCTTTTGGTTATAA 70749 Query 135873 AGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTA-GGAAATGGTGCTATGG 135931 || |||| ||||| || ||| | |||||||| || ||| |||| |||| ||| Sbjct 70750 AGTAATATTTCCAATAGAGAAGAAATTGGCATGTGGCGA-GTATGGAATGGGTGGAATGC 70808 Query 135932 CAGAAGTTG 135940 |||| ||| Sbjct 70809 AAGAAATTG 70817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923196488421080