Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 223 4e-53 >seq1 Length=1292604 Score = 223 bits (246), Expect = 4e-53 Identities = 836/1297 (64%), Gaps = 22/1297 (2%) Strand=Plus/Minus Query 62593 ATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCT 62652 ||||||||||||| ||||| ||| || || ||| || ||||| || || || || | Sbjct 443547 ATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTCATACGGCCCATCTTTTT 443488 Query 62653 CAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTAT 62712 | || || | ||||| ||||| | || | |||||||| |||||| |||| ||||| Sbjct 443487 CTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAACTTCAAAAATCTCCTTAT 443428 Query 62713 TTAGAT-CTTGTGCTTCCGGGCTATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCCG 62769 ||| | | | |||| | | ||| |||| ||| ||| | ||||| || | Sbjct 443427 TTAATTTCCTAGCCTTCTCTGAT-TCATATGGCATACG--AAGCATCATAAAGCAATCTG 443371 Query 62770 CTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTG 62829 | | ||||||||||||||| || | || | |||| | ||| ||| ||| | ||||| Sbjct 443370 CAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGATTTGAGTTTTTACATTCTG 443311 Query 62830 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCA 62889 | | || |||||| ||| | |||||| || | ||| || ||| ||| | | Sbjct 443310 GGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCCTCGTAATAACTCTCGTAA 443251 Query 62890 CATCCTTCAGTTTGAGAAAATCAAATCGCCC---ATCTATTACAAACATGTTCA-ATG-- 62943 | ||||| | || ||| || ||| |||| | ||| | ||| | | Sbjct 443250 CTTCCTTTAACTTATCAAAGTCGAATGTTTTGTTATCTTTGTCAACAAACTTCGGAAGAC 443191 Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 63003 ||| || ||||| ||||| || || | ||||| || | || | ||| || || | Sbjct 443190 CAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGG 443131 Query 63004 TGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 63063 |||| | |||||| | ||||| || ||||||| || |||||||| | || | Sbjct 443130 TGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAG 443071 Query 63064 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 63123 | ||||| || ||||| || || || |||||||| |||| || || || || Sbjct 443070 CGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACC 443011 Query 63124 AGACGACTC-GAGCCTTTATTATAGATTTGTATCT----CCTTTCTCTTTCGTATAGAGT 63178 | | | || | ||||| || || ||| || || | || ||||||| Sbjct 443010 AAA-GTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCCTGCT-TTTCGTACTCTTC 442956 Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACA 63238 ||| | | | ||||| || |||||||||| | ||| | |||||||||||||| Sbjct 442955 ATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCCCCTGCATTCATCCGGACA 442896 Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 ||| | | ||| ||| ||| | || || | | |||||| |||||||||| |||||| Sbjct 442895 CATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAG 442836 Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358 || ||| || || | ||| ||||| ||||| ||||||| | | || | Sbjct 442835 GGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAAT 442776 Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63418 ||| ||| || ||| ||||||||| ||||| || || || || | || ||||| Sbjct 442775 AAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTT 442716 Query 63419 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63478 ||| || || || || |||||||| || | ||||||||| | ||||||||||| | Sbjct 442715 CCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAG 442656 Query 63479 ACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT 63538 || || || | ||||||||||| ||||| || | | | ||||||||| | Sbjct 442655 TCCATTAGACCTTCCATTGGTACCCCGAATATACGAGCCCGTTCCTCTAATATTACTCAC 442596 Query 63539 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63598 || | || | || || || | ||| || ||| ||| | ||| ||||||| | Sbjct 442595 TGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAA 442536 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 || || ||||| ||| || || | |||| |||||| |||||||| | | Sbjct 442535 AATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCT 442476 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 | ||| || | || || | ||||| | ||| || ||||| | |||| || | || Sbjct 442475 TGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAAATACTTTTGCGATAATAA 442416 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778 || || || || | || | || ||||| | ||| || || | || | ||| Sbjct 442415 TTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTATACCACAAGAAACTCTCAT 442356 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 || | || || ||||| || ||||| ||||| | ||| | | | ||||| |||| Sbjct 442355 TAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTC 442296 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 |||||||| || ||||||| | ||| ||| ||| Sbjct 442295 TAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 442259 Score = 158 bits (174), Expect = 2e-33 Identities = 601/922 (65%), Gaps = 41/922 (4%) Strand=Plus/Plus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGA---CATAACTCCCATTTT 33292 ||| || || ||||||| ||| | | ||| |||||| ||||||||| | Sbjct 164302 TTAGAATTCTGCATCTAAGTCAAACTTTTGGTCATCTTGATTAACCATAACTCCAGCCAT 164361 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 ||| ||||| || || | ||||| || ||||| ||||| |||| | ||| ||| || Sbjct 164362 TTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGATC 164421 Query 33353 CATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAA 33412 ||| |||| || ||||| | ||||||||||||||| | ||| || ||| | Sbjct 164422 CATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGGAG 164481 Query 33413 TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 33472 |||||| || || ||||| |||||| ||| | | | | |||||||| || || | Sbjct 164482 TCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCCAATAAGATC 164541 Query 33473 AACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 ||| |||| ||| |||| |||||| | | ||| | || || | || ||||| Sbjct 164542 AACAGGAAGTGAGTCACA--AAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAATT 164599 Query 33531 AATCTAACGGTTTCT-TCACTCGGTGG---ATGTAATAAATGTTTAAACATCAAACATGC 33586 | || ||| | | ||| | || | | | ||| | || || || || Sbjct 164600 TGTTGTAC----TCTAGAAGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCAAGC 164655 Query 33587 GAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645 || || ||| || | || || || | ||||| | ||| ||||| || || ||||| | Sbjct 164656 AAAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAG 164714 Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGAAAAGAAGATT 33704 |||| || ||||||||||||||||||||||| | | | || | | || ||||| | ||| Sbjct 164715 GCATAAGTCCACGCTTTTTAAGCCAAAATATAGCA-CAAAAGCTACCAGAAAAAAGAATT 164773 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC---ATGTATC 33761 |||||||| ||| || |||||| |||||| || || | || || || ||| Sbjct 164774 CCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTTTCATTATTCATC 164830 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || || ||||| || || |||||||| || || || || || | ||| Sbjct 164831 CATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAAAA 164890 Query 33822 AG-AT---AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || || | || ||| ||| || ||| ||| | || || || | ||| | Sbjct 164891 AGCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATTAACAAGGAATATGT 164946 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTAGCCTCGGTAA 33936 ||| |||||| | ||||| ||||| |||||| | || | ||| ||| || || | | Sbjct 164947 TTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATTCTTGCTTCTGGGA 165005 Query 33937 TCTGCACTTCT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | || | |||| || |||| | | || || ||||| | || || |||||||| || Sbjct 165006 TATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAATACCATCACTAGCA 165064 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGTTTATTCC 34053 ||||| || || | || | ||| ||||||| | | || ||| || || | | || Sbjct 165065 GCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCTTTAAGACTTTCCC 165122 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 |||| | |||||| | || || | ||||| |||||| ||||| ||||| | Sbjct 165123 AATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTT 165182 Query 34114 TTTTATACATATTCCAGATGTC 34135 ||||||||||| ||| || || Sbjct 165183 TTTTATACATAAACCAAATATC 165204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817387436560