Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1 363 1e-95 >seq1 Length=1292604 Score = 363 bits (402), Expect = 1e-95 Identities = 1011/1533 (66%), Gaps = 57/1533 (4%) Strand=Plus/Minus Query 37126 TGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTA 37185 || ||||| || || ||| || ||||| | ||| || | ||||||||| |||| Sbjct 443767 TGAGGATTCACTACAAAAAATTCACCAGAAAGTACCCTACGATGATATATATTTGAAGTA 443708 Query 37186 TATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGT 37245 ||||||||| || || |||| ||||||||| || ||||| |||||||||||||| Sbjct 443707 AATGGTTCAAAACTTTCGTTGTTACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGA 443648 Query 37246 GCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAA 37305 || |||||||| ||| | | |||| || ||| || | ||| ||| || ||| Sbjct 443647 GCAATTAGAAGTGAATTACGGAGCCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAG 443588 Query 37306 TCCCATA------AATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTA 37359 || || | |||| | | || | |||||| ||| ||||||||||||||||| Sbjct 443587 TCGCAAAGCCCAGAATCAG---GCTTAACTCCCCACATGTCAAATTGTAGAATACCTTTA 443531 Query 37360 CTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTA 37419 ||||| || || | ||| || ||||| || || | ||| || || ||||||||| Sbjct 443530 CTCGCGGGTGACCCAGAATACGTTTCATACGGCCCATCTTTTTCTGCGAGCTCGCAACTA 443471 Query 37420 GATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGC-TTC 37478 | || || || |||||||| || ||| ||||| | |||||||| | | || ||| Sbjct 443470 GCCTCGAGCGCCGCATAATAAATAACTTCAAAAATCTCCTTATTTAATTTCCTAGCCTTC 443411 Query 37479 TTCGCTATCGAATG-CATAGCCCAATAAT-ATAAACACATCAGCCAAACCCTGAACACCG 37536 | | | || ||| |||| | || || ||||| ||| || | || |||||||| Sbjct 443410 TCTGAT-TCATATGGCATA--CGAAGCATCATAAAGCAATCTGCAAGTCCTTGAACACCA 443354 Query 37537 ATACCTATGGGTCTATGTTTCTTATTAGA-TCTAGACGATTCTATCACTGGATAATAATT 37595 || || | || | |||||| ||| || | | || ||||| | | |||||| Sbjct 443353 ATTCCAAGCGGGCGATGTTTTAGATTTGAGTTTTTAC-ATTCTGGGAGAGAATAATATCC 443295 Query 37596 GATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTC 37655 | ||| | ||||| |||| ||| | | | | |||||| | | ||||| || Sbjct 443294 GTGATCAACAATTTTGTTTAAATTCCTCGTAATAACTCTCGTAACTTCCTTTAACTTATC 443235 Query 37656 GAACATAAATACGTTATTATT------AACAAATTTACTCAACGA--AATAGATCCTAGA 37707 || ||| || |||| |||||| || | || || ||| || | || Sbjct 443234 AAAGTCGAATGTTTTGTTATCTTTGTCAACAAACTT-CGGAA-GACCAATGGACGCCAGG 443177 Query 37708 TTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTC 37767 ||||| ||||||| ||||| | || || | | | |||||| || || || | |||||| Sbjct 443176 TTACAAACAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGGTGCATAAATTACTG 443117 Query 37768 GATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGT 37827 || ||| || |||||||| | || || || |||| || || || || Sbjct 443116 GAAACAATAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAGCGTCCTTGTAGCAG 443057 Query 37828 ATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCT 37887 || | ||||||||| ||| |||||||| | | || | ||| || || ||| Sbjct 443056 ATGAAAGGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACCA--AAGTTTCTGC- 443000 Query 37888 TTAACGATCGCTTTAAtt-tttttCTT---------TG--TTTCGTATTCTATATATAAT 37935 || || || |||||||| || ||||||| ||| ||||| | Sbjct 442999 ---------GCCTTCATAGTTTTTCTTCCGCGGCCCTGCTTTTCGTACTCTTCATATAGT 442949 Query 37936 TTGTTAAAATCATTCCCCCATACATC--GCATAATCCTGGACATTCGCATGGACACATTA 37993 || ||||| |||| ||||| ||||| ||| |||| ||||| |||||||| | Sbjct 442948 TTCTTAAACTCATCACCCCAAACATCTTGCAACCCCCTG--CATTCATCCGGACACATAA 442891 Query 37994 GAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAG 38053 ||| ||| |||| ||||| || || | |||||||||| |||||| ||||| | |||| Sbjct 442890 GAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAG 442831 Query 38054 TAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAAT 38113 ||| | || | ||| || || || || ||||||||||| | ||| | Sbjct 442830 GAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACT 442771 Query 38114 CGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCAC 38173 | | | ||| | ||||| || || | |||||| | || || || | ||| | | Sbjct 442770 CCACAACATCTACATGCCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTC 442711 Query 38174 CTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCAT 38233 | || || | |||||||||| | || | |||||| | | |||||| || | | |||| Sbjct 442710 CACCTTGGTCAATATATCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCAT 442651 Query 38234 TAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACA 38293 |||| | || || |||| ||||| | ||| | ||| |||||||| | | || Sbjct 442650 TAGACCTTCCATTGGTACCCCGAATATACGAGCCCGTTCCTCTAATATTACTCACTGCCA 442591 Query 38294 ATCCTATTCCACCTGCATGTTTTGATATTAAA-GCGCATTGTTTTAACGTATCAAATATA 38352 ||| | || || ||| || || || || || |||| | ||| ||| ||||| ||| Sbjct 442590 CTCCAAGACCGCCGGCA-GTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAAAATA 442532 Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGA 38412 || |||||| || || |||| |||| ||||||| ||||||||||| |||| Sbjct 442531 CCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGA 442472 Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || |||| ||| || | ||||| | ||||| | || | |||| ||| || | ||| Sbjct 442471 GTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAAATACTTTTGCGATAATAATTTA 442412 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| | | || | || |||||||||| || ||||| ||| || |||||||| Sbjct 442411 TATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTATACCACAAGAAACTCTCATTAGA 442352 Query 38533 ATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAAT 38592 | |||||||||||| |||| || || |||| | | || ||||| || ||||||| Sbjct 442351 AGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTCTAAA 442292 Query 38593 GTTTTTATTCCAAAATAACTATATGAATAATCT 38625 ||||| | | |||||||| |||| | ||||| Sbjct 442291 GTTTTGAATGCAAAATAATCATATTCAAAATCT 442259 Score = 159 bits (176), Expect = 3e-34 Identities = 564/860 (66%), Gaps = 32/860 (4%) Strand=Plus/Plus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||||||||| | |||| ||| || ||||| || ||||||| ||||| ||| | Sbjct 164361 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 164420 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | || |||||| | |||||| | | ||| | | | | | | Sbjct 164421 CCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGGA 164480 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 |||||| || || ||||| ||||| |||| ||| | | | | ||||| || ||||||| Sbjct 164481 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCCAATAAGAT 164540 Query 11520 CCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | || |||| | | | |||| || | |||||| || ||| || || ||| || Sbjct 164541 CAACAGGAAGTG--AGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAAT 164598 Query 11578 CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATG---TTTAAACATTAAACACGC 11634 ||| || || || |||| | | || | | ||| | ||||| || || Sbjct 164599 TT--GTTGTA-CTCTAGAAGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCAAGC 164655 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||| ||| |||||| ||||| || | || || ||||||||||| ||||| | ||| || Sbjct 164656 AAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAGG 164715 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| | ||| || ||||| | ||||||||||||| ||| ||||||||| | ||||| Sbjct 164716 CATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAATTCC 164775 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTC-TCCATATACCTTGTTGCTAGATATCCATT 11813 || ||||| ||| | | | ||| || | | | | ||| | || ||||||| Sbjct 164776 TTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTT-TCATTATTCATCCATT 164834 Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTAC-GCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 | | ||||| || ||||||||||| || ||| || ||||| | | ||| Sbjct 164835 TAGTTGCCCATTCTGCTTTCTTTTTAACTGCA-GAAATATGAGAAATAGCCTCA---AAA 164890 Query 11873 TGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 |||||| |||| | | || | | |||| | || ||||| || ||| |||| Sbjct 164891 AGCATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAATATGTTTCA 164950 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA-TCGTGCCTCTGAACACTG 11988 |||||| | || ||||| ||||||||| |||| | ||| || ||| |||| || Sbjct 164951 TTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATTCTTGCTTCTGGGATATG 165009 Query 11989 TACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAA 12047 || || | | |||| | | || || || || | |||||||||||||||| |||| Sbjct 165010 TATTTCTCTTAGGAAAT-TGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAGCAA 165068 Query 12048 AAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAAT 12104 | || ||||| | | ||| ||||| | | | || ||||||| | | ||||||| Sbjct 165069 AGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTA---AGACTTTCCCAAT 165125 Query 12105 CATCTA-AATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGT 12163 | |||| ||||| ||| || | |||||| |||||| ||| ||| || | Sbjct 165126 C-TCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTTT 165184 Query 12164 TTATACATTTTCCAGATATC 12183 |||||||| ||| ||||| Sbjct 165185 TTATACATAAACCAAATATC 165204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524641872880