Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 251 9e-62 >seq1 Length=1292604 Score = 251 bits (278), Expect = 9e-62 Identities = 1179/1855 (64%), Gaps = 38/1855 (2%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||| || ||| | |||| || || | |||||| || || || ||||||| Sbjct 444100 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 444041 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || |||| || || |||||||| | || || | | | | | || | | ||| Sbjct 444040 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAAAGTTAGCATTTTCCATA 443981 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || ||||| | ||| ||| || || | | ||||| ||||||||||| | || Sbjct 443980 TGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGATT 443921 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAG 65077 | |||||||| ||| ||||||| |||||||||| | ||| | || | ||| Sbjct 443920 ACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGATT 443861 Query 65078 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | |||| ||||| |||| || ||| || || | | || | | |||| | Sbjct 443860 GTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATTTTGTTTAAGCCTGTCATCC 443801 Query 65136 CATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATGCGGATTAACTACTTGAAATTC 65191 |||| | | | | || || || | || | ||| ||||| ||||| |||||| Sbjct 443800 CATAG----CCCAAGTTCAAGCAAGTCATTGAGTAAATGAGGATTCACTACAAAAAATTC 443745 Query 65192 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 65251 ||||| | ||| || ||| || ||||| ||| | ||||| | | || || || Sbjct 443744 ACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTT 443685 Query 65252 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 65311 || || ||||| | || || ||||| ||||| || || | | | ||| | || Sbjct 443684 ACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAG 443625 Query 65312 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC---GGTAC 65368 || || | || | ||||| || | ||||| | ||||| | || || Sbjct 443624 CCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTT 443565 Query 65369 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 65428 ||| |||||||||||| ||||| ||| || || ||| || || Sbjct 443564 AACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTC 443505 Query 65429 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 65488 || || || || || || || || || ||||| ||||| | || | |||||||| Sbjct 443504 ATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAAC 443445 Query 65489 TTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGG-ATAATTTAAG 65546 ||| || |||| |||||||| | | | |||| | | ||| |||| ||| ||| Sbjct 443444 TTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTCTGAT-TCATATGGCATACG--AAG 443388 Query 65547 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 65605 | ||||| ||||| | ||||||||||||||| || | || | |||| | ||| Sbjct 443387 CATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGATT 443328 Query 65606 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 65665 ||| ||| | |||||| | || |||||| ||| | |||||| || | ||| || Sbjct 443327 TGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCCT 443268 Query 65666 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTC---ATCTATTAC 65722 ||| ||| | || ||||| | || ||| || ||| | |||| | | Sbjct 443267 CGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTTATCTTTGTC 443208 Query 65723 AAACATGTTCA-ATG--CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 65779 || | ||| | | ||| || ||||| |||||||| || | ||||| || | Sbjct 443207 AACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAGT 443148 Query 65780 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 65839 || | ||| || || ||||| | |||||| | || || || ||||||| || || Sbjct 443147 GTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGTT 443088 Query 65840 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899 |||||| | || || ||||| || ||||| || || || |||||||| |||| Sbjct 443087 ACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAGC 443028 Query 65900 TTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCT----CTTT 65954 || || || ||| | | || | ||||| || || ||| || | | Sbjct 443027 TTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCCT 442972 Query 65955 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 66014 || ||||||| | ||| | | | ||||| || |||||||||| | ||| || Sbjct 442971 GCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCCC 442913 Query 66015 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 66074 ||||||||||||||||| | | ||| ||| ||| | || || | | |||||| Sbjct 442912 CTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAAT 442853 Query 66075 AGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 66134 |||||||||| |||||| || ||| | || | | ||| ||||| ||||| | Sbjct 442852 AGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGA 442793 Query 66135 TTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCC 66194 |||||| | | || | ||| ||| || ||| ||||||||| ||||| || || || Sbjct 442792 TTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCA 442733 Query 66195 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 66254 || | || ||||| ||| || || || || |||||||| || | ||||||||| Sbjct 442732 ATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACG 442673 Query 66255 CTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGCTTCCACT 66313 | ||||||||||| | ||||| || | |||||||| ||| || ||||| || | Sbjct 442672 CGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGA-ATATACGAGCCCGT 442614 Query 66314 TGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373 | | | ||||||||| | || | || | || || || | ||| || ||| || Sbjct 442613 TCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCACA 442554 Query 66374 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 66433 | | ||| ||| ||| | || || |||||| ||| || || | |||| |||||| Sbjct 442553 TTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACA 442494 Query 66434 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 |||||||| | | ||| || | || || | ||||| | ||| || ||||| Sbjct 442493 AGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAA 442434 Query 66494 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 | |||| || | || || || || || | || | || ||||| | ||| || Sbjct 442433 ATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTAT 442374 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 66613 || | || | ||||| | || || ||||| || || |||||||| | ||| | Sbjct 442373 ACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCT 442314 Query 66614 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 66668 | | ||||| |||| |||||||| || ||||||| | ||| ||| ||| Sbjct 442313 GAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 442259 Score = 206 bits (228), Expect = 4e-48 Identities = 583/876 (67%), Gaps = 36/876 (4%) Strand=Plus/Plus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||||||||| |||| ||||| || || | ||||| || ||||| |||||||||| Sbjct 164347 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 164406 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCC 35973 | ||| ||| ||||| ||||||| ||||| |||||| |||||||| | | Sbjct 164407 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 164466 Query 35974 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 36033 || || ||| | |||||| || |||||||| |||||| ||| | | | | || Sbjct 164467 CAGAGCAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTT 164526 Query 36034 CATTCCTATAAGTTTAACTGGAAG--AGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 |||||| ||||| | ||| ||||| || |||| |||||| | | ||| | | || Sbjct 164527 CATTCCAATAAGATCAACAGGAAGTGAGTCACA--AAGAAAGTTTCTTTCTACATCAACA 164584 Query 36092 GCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTA 36148 || |||| ||||| | |||| | | | ||| | | || | | ||| Sbjct 164585 GCTTCTGAGATAATTTGTTGTACTCTAGA---AGTTGGTAGTTTATATTTAAGAGCTTTG 164641 Query 36149 AACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 36207 | || || || || || || ||| |||| || || || | ||||| | ||| || || Sbjct 164642 TATATTAAGCAAGCAAAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGA 164700 Query 36208 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-C 36266 || || ||||| ||||| || ||||||||||||||||||||||| | | |||| | | | Sbjct 164701 GAATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTAC 164759 Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 36326 ||||||| | |||||||||||| || || |||||| |||||| || || | | Sbjct 164760 CAGAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATC 164816 Query 36327 TGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 36383 | || || ||||| || ||||| || || |||||||| || || || Sbjct 164817 TTTCATTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAG 164876 Query 36384 CTATAGCATTAAAGAG-AT---AGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 ||||| | ||| || || | || ||| ||| || ||| |||| | ||||| Sbjct 164877 AAATAGCCTCAAAAAGCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATT 164932 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA- 36498 || | ||| |||| |||||| | ||||| |||||||||||| | || | ||| Sbjct 164933 AACAAGGAATATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACAT 164991 Query 36499 TCTAGCCTCGGTAATCTGTACTTCT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTA 36557 ||| || || | || |||| |||| || |||| | | || || ||||| | || | Sbjct 164992 TCTTGCTTCTGGGATATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAA 165050 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || ||||| || ||||| || || | || | ||| ||||||| | | || ||| Sbjct 165051 TACCATCACTAGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTC 165108 Query 36618 TT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 36675 || || | | |||||| | |||||| | || || | ||||| |||||| Sbjct 165109 TTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAA 165168 Query 36676 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 36711 ||||| ||||| |||||||||||| ||| || || Sbjct 165169 CGATGCTTCTGCTTTTTTATACATAAACCAAATATC 165204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172577866680