Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 300 2e-76 >seq1 Length=1292604 Score = 300 bits (332), Expect = 2e-76 Identities = 1193/1855 (64%), Gaps = 38/1855 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| || ||| | |||| || || | |||||| || || || ||||||| Sbjct 444100 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 444041 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || |||| || ||||||||||| | || || | | | | | || | | ||| Sbjct 444040 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAAAGTTAGCATTTTCCATA 443981 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || ||||| | ||| ||| || || | | ||||| ||||||||||| | || Sbjct 443980 TGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGATT 443921 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAG 78956 | |||||||| ||| ||||||| |||||||||| | ||| | || | ||| Sbjct 443920 ACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGATT 443861 Query 78957 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | |||| ||||| |||| || ||| || || | | || | | |||| | Sbjct 443860 GTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATTTTGTTTAAGCCTGTCATCC 443801 Query 79015 CATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATGCGGATTAACTACTTGAAATTC 79070 |||| | | | | || || || | || | ||| ||||| ||||| |||||| Sbjct 443800 CATAG----CCCAAGTTCAAGCAAGTCATTGAGTAAATGAGGATTCACTACAAAAAATTC 443745 Query 79071 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATT 79130 ||||| | ||| || ||| || ||||| ||| ||||||| | ||| || || Sbjct 443744 ACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTT 443685 Query 79131 TCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAG 79190 || || ||||| | || || || || ||||| || || | | | ||| | || Sbjct 443684 ACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAG 443625 Query 79191 ACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC---GGGAC 79247 || || || | ||||| || || ||||| || ||||| |||| || Sbjct 443624 CCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTT 443565 Query 79248 AACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTC 79307 ||| ||| | ||| ||||||||||||| ||||| ||| ||| || | || ||||| Sbjct 443564 AACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTC 443505 Query 79308 ATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGT 79367 ||| || || || ||||| || | || ||||| ||||| | || | |||||||| Sbjct 443504 ATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAAC 443445 Query 79368 TTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTATCAAATGG-ATAATTTAAG 79425 ||| ||||||| |||||| | | | | ||||| | | ||| |||| ||| ||| Sbjct 443444 TTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTCTGAT-TCATATGGCATACG--AAG 443388 Query 79426 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 | ||||| ||||| | ||||||||||||||| || | || | |||| | ||| Sbjct 443387 CATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGATT 443328 Query 79485 AGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCT 79544 || ||| | |||||| | || |||||| ||| | |||||| || | |||||| Sbjct 443327 TGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCCT 443268 Query 79545 GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCC---ATCTATTAC 79601 || ||| | || ||||||| || ||| || ||| | |||| | | Sbjct 443267 CGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTTATCTTTGTC 443208 Query 79602 AAACATGTTCA-ACG--CGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658 || | ||| | | | | || ||||| |||||||| || | ||||| || | Sbjct 443207 AACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAGT 443148 Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 || | ||| ||||| ||||| | ||||| | ||| || || ||||||| || || Sbjct 443147 GTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGTT 443088 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 |||||| | || || ||||| || ||||| || || || |||||||| |||| Sbjct 443087 ACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAGC 443028 Query 79779 TTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCT----CTTT 79833 || || || ||| | | || | ||||| || || || || | | Sbjct 443027 TTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCCT 442972 Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 || ||||||| | | ||||| | | ||||| || ||||||||||| | || || Sbjct 442971 GCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCCC 442913 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953 ||||| || |||||||| | | ||| ||| || | || || | | |||||| Sbjct 442912 CTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAAT 442853 Query 79954 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013 |||||||||| |||||| || ||| || || | | ||| |||||| ||||| | Sbjct 442852 AGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGA 442793 Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073 |||||| | | || | ||| ||| || ||| ||||||||| ||||| || || || Sbjct 442792 TTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCA 442733 Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 || | ||| ||||| ||| || || || || |||||||| || | ||||||||| Sbjct 442732 ATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACG 442673 Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGCTTCCACT 80192 | ||||||||||| | ||||| || | |||||||| ||| || ||||| || | Sbjct 442672 CGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGA-ATATACGAGCCCGT 442614 Query 80193 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252 | | ||||||||| | || | || | || || || | ||| || ||| || Sbjct 442613 TCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCACA 442554 Query 80253 TCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312 | | ||| ||| ||| | || || ||||| ||| || || | |||| |||||| Sbjct 442553 TTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACA 442494 Query 80313 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372 |||||||| | | ||| || | || || | ||||| | ||| || ||||| Sbjct 442493 AGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAA 442434 Query 80373 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAAT 80432 | |||| || | || || || || || | || | || ||||| | ||| || Sbjct 442433 ATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTAT 442374 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492 || | || | ||||| | || || ||||| || || |||||||||| ||| | Sbjct 442373 ACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCT 442314 Query 80493 CAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 80547 | | || || |||| |||||||| || ||||||| | ||| ||| ||| Sbjct 442313 GAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 442259 Score = 167 bits (184), Expect = 3e-36 Identities = 573/875 (65%), Gaps = 34/875 (4%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||||||||| |||| ||||| || || | ||||| || ||||| ||||| |||| Sbjct 164347 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 164406 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 | ||| ||| ||||| |||| || ||||| | |||||| |||||||| | | Sbjct 164407 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 164466 Query 49776 CAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 49835 || || ||| | |||||| || |||||||| |||||| ||| | | | | || Sbjct 164467 CAGAGCAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTT 164526 Query 49836 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 49895 |||||| ||||| | ||| ||||| | || |||||| | | ||| | || || Sbjct 164527 CATTCCAATAAGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGC 164586 Query 49896 ATCTGTTATAATAGATCTAACGGTTTCTTCAC-TCGGTGGATGCAATAAATG---TTTAA 49951 |||| ||||| | || ||| | | ||| | | || | | ||| Sbjct 164587 TTCTGAGATAATTTGTTGTAC----TCTAGAAGTTGGTAGTTTATATTTAAGAGCTTTGT 164642 Query 49952 ACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 | || || || || || || ||| || | || || || | ||||| ||||| || || Sbjct 164643 ATATTAAGCAAGCAAAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGAG 164701 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ACCC 50069 || || ||||| ||||| || ||||||||||||||||||||||| | | |||| | || Sbjct 164702 AATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTACC 164760 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT 50129 |||||| | ||||||||||| || || ||| || |||||| || || | || Sbjct 164761 AGAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCT 164817 Query 50130 GTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186 || || ||||| || ||||| || || |||||||| || || || Sbjct 164818 TTCATTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGA 164877 Query 50187 TATGGCATTAAAGAG-AT---AGtttttttCATTACTATCTTTAACATAAGTATCGATCA 50242 || || | ||| || || | || ||| ||| || ||| ||| | || || | Sbjct 164878 AATAGCCTCAAAAAGCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATTA 164933 Query 50243 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-T 50301 | | ||| |||| |||||| | ||||| ||||| |||||| | || | ||| | Sbjct 164934 ACAAGGAATATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATT 164992 Query 50302 CTAGCCTCGGTAATCTGCACTTCT-GTACAAAATCGTTCAGCTAAATTTTCATTCACTAT 50360 || || || | || || | |||| || |||| | |||| || ||||| | || || Sbjct 164993 CTTGCTTCTGGGATATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAAT 165051 Query 50361 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGT 50420 || ||||| || ||||| || || | || | ||| ||||||||| | || |||| | Sbjct 165052 ACCATCACTAGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCT 165109 Query 50421 T--AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 50478 | || | | |||||| | |||||| | || || | ||||| |||||| Sbjct 165110 TTAAGACTTTCCCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAAC 165169 Query 50479 GATGCCTCTGCCTTTTTATACATATTCCAGATGTC 50513 ||||| ||||| |||||||||||| ||| || || Sbjct 165170 GATGCTTCTGCTTTTTTATACATAAACCAAATATC 165204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268557584280