Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq25 114 1e-20 seq18 91.5 1e-13 >seq25 Length=676938 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| || ||||| || | ||| ||||||||| | ||||||||| || | || | Sbjct 542016 AGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTA 542075 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 |||| ||||||||||| || ||||| |||| ||||||||||| | || | ||||||| Sbjct 542076 CCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCT 542135 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || ||| |||| || | ||| ||||| || || || || | || Sbjct 542136 TTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTG 542195 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCT 43114 || || || || |||| |||||| |||||||| ||||| |||| Sbjct 542196 ATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTTCT 542238 >seq18 Length=776017 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 |||||||| || ||||| | |||| ||||||||| | ||||||||| || | || | | Sbjct 281305 AGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTT 281246 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || || ||||| || || ||||| || || ||||||||||| | || | ||||| Sbjct 281245 CCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCC 281186 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || ||| | || || | ||| |||||| | || || || | || Sbjct 281185 TTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTG 281126 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||| || | ||| || |||||||| ||||| Sbjct 281125 ATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 281088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369474505566