Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 260 2e-64 >seq1 Length=1292604 Score = 260 bits (288), Expect = 2e-64 Identities = 1157/1817 (64%), Gaps = 32/1817 (2%) Strand=Plus/Minus Query 70836 TAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 70895 |||||| || ||||| ||||||| || |||| || || |||||||| | || Sbjct 444065 TAGATAATAAATGCCAGTTTTTAATCCTTTTTTCCAGCCATAGAAATGCATCGATGATAA 444006 Query 70896 TTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGC 70955 || | | || ||| || | || |||||||| | |||||| || || | | Sbjct 444005 CTTTGCAAAGTTAGCATTTTCCATATGAATATTTAAAGACTGAGACTGGCAAATATATGG 443946 Query 70956 TCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 71015 ||||| ||||||||||| | || | |||||||| ||| ||||||| |||||||| Sbjct 443945 GCCCCTATCTGCAGCCATATCGATTACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATA 443886 Query 71016 AACT-CGCTTAATATCTTCTGGAAGGTTTG--TATTCTGAATGGATCCACCATCTGCAAT 71072 || | ||| | || | ||| || | |||| ||||| |||| || |||||| Sbjct 443885 AAGTTCGCGGACGTCCTCCGGGATTGTAAGAATATTTTGAATACTTCCATTATTTGCAAT 443826 Query 71073 AATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA--AACTC--TAAGGA 71128 || | | ||| | | |||| ||||| | | | | || || || | || | Sbjct 443825 GATATTTTGTTTAAGCCTGTCATCCCATAG----CCCAAGTTCAAGCAAGTCATTGAGTA 443770 Query 71129 GATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGG 71188 ||||||||| ||||| |||||| ||||| | ||| |||||| || ||||| | Sbjct 443769 AATGAGGATTCACTACAAAAAATTCACCAGAAAGTACCCTACGATGATATATATTTGAAG 443710 Query 71189 TATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 71248 || | ||||| | || || || || || ||||| | || || ||||| ||||| | Sbjct 443709 TAAATGGTTCAAAACTTTCGTTGTTACCTAATATTTGCGAGGTAGACGCAGTAGGCATTG 443650 Query 71249 GTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCC 71308 | || | | || ||| | || |||| || | ||||| || || |||| Sbjct 443649 GAGCAATTAGAAGTGAATTACGGAGCCCATACTTAGAAATCCTTTCTTTAAGTGAATCCC 443590 Query 71309 AATTCCAAAGATCCGAT---GGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTAC 71365 | | ||||| | || || ||| || || |||| Sbjct 443589 AGTCGCAAAGCCCAGAATCAGGCTTAACTCCCCACATGTCAAATTGTAGAATACCTTTAC 443530 Query 71366 TAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCG 71425 | ||| ||| || | ||| || || || || || |||||||| || || || ||||| | Sbjct 443529 TCGCGGGTGACCCAGAATACGTTTCATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAG 443470 Query 71426 CCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCC 71484 |||| | || |||||||||| ||| ||||||| |||||| | | | | |||| Sbjct 443469 CCTCGAGCGCCGCATAATAAATAACTTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCT 443410 Query 71485 GGGCTATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAA 71542 | | ||| |||| ||| ||| | ||||| ||||| | ||||||||| |||| Sbjct 443409 CTGAT-TCATATGGCATACG--AAGCATCATAAAGCAATCTGCAAGTCCTTGAACACCAA 443353 Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 | || | || | ||| | ||| || ||| | |||||| | || |||||| Sbjct 443352 TTCCAAGCGGGCGATGTTTTAGATTTGAGTTTTTACATTCTGGGAGAGAATAATATCCGT 443293 Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662 ||| | |||||| || | ||| || || ||| | || ||||||| || || Sbjct 443292 GATCAACAATTTTGTTTAAATTCCTCGTAATAACTCTCGTAACTTCCTTTAACTTATCAA 443233 Query 71663 AATCAAATCTCCC---ATCTATTACAAACACGTTC--AAGGC-AACAGATGCCAGATTAC 71716 | || ||| | |||| | ||| | ||| ||| | || || ||||| |||| Sbjct 443232 AGTCGAATGTTTTGTTATCTTTGTCAACAAACTTCGGAAGACCAATGGACGCCAGGTTAC 443173 Query 71717 AAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACT 71776 |||| || | ||||| || | || | ||||||||| ||||| | |||||| | Sbjct 443172 AAACAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGGTGCATAAATTACTGGAAA 443113 Query 71777 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAA 71836 || || || ||||||| || |||||||| | || || ||||| || || | Sbjct 443112 CAATAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGA 443053 Query 71837 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTT 71895 | || || || |||||||| |||| || || || ||| | | || | ||||| Sbjct 443052 AAGGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTC 442994 Query 71896 ATTATATT-CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTC 71954 || | || ||| | | || ||||||| | | ||||| | | ||||| || Sbjct 442993 ATAGTTTTTCTTCCGCGGCCCTGCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATC 442935 Query 71955 TCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATC 72014 |||||| ||| | || || ||||||| ||||||||| | | ||| ||| || Sbjct 442934 ACCCCAAACATCTTGCAACCCCCTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTC 442875 Query 72015 ATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 72074 | | || | | |||||| |||||||||| |||||| || ||| || || | | Sbjct 442874 TTTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCA 442815 Query 72075 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134 ||| |||||| ||||| ||||||| | | || | ||| ||| || ||| ||| Sbjct 442814 TCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACTCCACAACATCTACATG 442755 Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 |||||| ||||| || || || || | ||| ||||| ||| || || || || || Sbjct 442754 CCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATA 442695 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 72254 |||||| || | ||||||||| | ||||||||||| | ||||| || |||||||| Sbjct 442694 TCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGT 442635 Query 72255 -CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTG 72313 ||| || ||||| || | | | |||||| || | || | || | || || | Sbjct 442634 ACCCCGA-ATATACGAGCCCGTTCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGG 442576 Query 72314 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 72373 | | ||| || ||| ||| | ||| ||| ||| | || || |||||| ||| | Sbjct 442575 CAGTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCT 442516 Query 72374 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 72433 | || | |||| |||||| |||||||| | | ||| || | || || | Sbjct 442515 CTGGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAA 442456 Query 72434 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTG 72493 ||||| | ||| || ||||| | |||| || | || || || || || | || | Sbjct 442455 GCGTAGGTGTAGCATGGGTAAAATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAG 442396 Query 72494 ATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTT 72553 || ||||| | |||||| || | || | ||||| | ||| || ||||| | Sbjct 442395 CCTCGATATCACCGCAATGTATACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCT 442336 Query 72554 CAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 72613 | || |||||||||| ||| | | | ||||| |||| |||||||| || |||||| Sbjct 442335 CTACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAAT 442276 Query 72614 AGTTGTATGAAAAGTCT 72630 | | ||| ||| ||| Sbjct 442275 AATCATATTCAAAATCT 442259 Score = 185 bits (204), Expect = 1e-41 Identities = 608/923 (66%), Gaps = 43/923 (5%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGA---CATAACTCCCATTTT 41775 ||| || || ||||||| ||| | | ||| |||||| ||||||||| | Sbjct 164302 TTAGAATTCTGCATCTAAGTCAAACTTTTGGTCATCTTGATTAACCATAACTCCAGCCAT 164361 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 ||| ||||| || || | ||||| || ||||| || || |||| | ||| ||| || Sbjct 164362 TTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGATC 164421 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 ||| |||| || ||||| | |||||| |||||||| | ||| || ||| | Sbjct 164422 CATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGGAG 164481 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 |||||| || | ||||| |||||| ||| | | | | |||||||| ||||| | Sbjct 164482 TCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCCAATAAGATC 164541 Query 41956 AACTGGAAG--AGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 ||| ||||| || |||| |||||| | | ||| | | || || |||| ||||| Sbjct 164542 AACAGGAAGTGAGTCACA--AAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAATT 164599 Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTAAACATCAAACATGCG 42070 | |||| | | | ||| | | || | | ||| | || || || || Sbjct 164600 TGTTGTACTCTAGA---AGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCAAGCA 164656 Query 42071 AAATC-GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 || || ||| || | || ||||| | ||||| | ||| || || || || ||||| || Sbjct 164657 AAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAGG 164715 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTC 42188 ||| || ||||||||||||||||||||||||| | |||| | | |||||||| | |||| Sbjct 164716 CATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTACCAGAAAAAAGAATTC 164774 Query 42189 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC---ATGTATCC 42245 ||||||| || || |||||| |||||| || || | || || || |||| Sbjct 164775 CTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTTTCATTATTCATCC 164831 Query 42246 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 42305 | || ||||| || || |||||||| || || || || || | ||| | Sbjct 164832 ATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAAAAA 164891 Query 42306 G-AT---AGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 | || | || ||| ||| || ||| |||| | || || || | ||| || Sbjct 164892 GCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATTAACAAGGAATATGTT 164947 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTGGCCTCGGTAAC 42420 || |||||| | ||||| ||||| |||||| | || | ||| ||| || || | | Sbjct 164948 TCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATTCTTGCTTCTGGGAT 165006 Query 42421 CTGTACTTCT-GTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 |||| |||| || |||| | |||| || ||||| | || || || ||||| || | Sbjct 165007 ATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAATACCATCACTAGCAG 165065 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT--AATTTATTCCA 42537 |||| || || | || | ||| ||||||| | | || ||| || | | | ||| Sbjct 165066 CAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCTTTAAGACTTTCCCA 165123 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTC--TACCGTCCAAAATGATGCTTCTGCC 42595 ||| | |||||| | || || | ||||| || | |||||| ||||||||||| Sbjct 165124 ATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAAC--CCAAAACGATGCTTCTGCT 165181 Query 42596 TTTTTATACATATTCCAGATATC 42618 |||||||||||| ||| ||||| Sbjct 165182 TTTTTATACATAAACCAAATATC 165204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138973490520