Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq18 152 4e-32 seq25 134 1e-26 >seq18 Length=776017 Score = 152 bits (168), Expect = 4e-32 Identities = 175/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | |||||| |||||||| | ||||| |||||||| || |||||||| Sbjct 281542 CCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCAGAA 281483 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||||||||| || || ||| | || ||||||||||| || |||| Sbjct 281482 AGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGA 281423 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTA 15314 ||||| || || || ||| ||||| ||||||| |||| || || || | || ||| | Sbjct 281422 ATTCCCTCCTTATCTTGAATCTTTGC-CTTTACATTTTCAATTGTGTC-CGATGGTTCAA 281365 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||| || || || || || |||| ||||| |||||||| |||||| Sbjct 281364 CCTCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCATA 281315 Score = 141 bits (156), Expect = 7e-29 Identities = 175/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | |||||| |||||||| | ||||| || ||||| || |||||||| Sbjct 281314 CCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAG 281255 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | || |||||||| || || || | || ||||| ||||| || |||| Sbjct 281254 AGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGA 281195 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTA 15314 |||||||| || || ||| ||||| ||||||| |||| || || || | || ||| | Sbjct 281194 ATTCCTTCCTTATCTTGAATCTTTGC-CTTTACATTTTCAATTGTGTC-CGATGGTTCAA 281137 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 | || || || || || || ||||||| ||| || |||||||| |||||| ||| Sbjct 281136 CTTCCAAAGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATAATTG 281083 Score = 134 bits (148), Expect = 1e-26 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | ||| || || ||||| | ||||| |||||||| || |||||||| Sbjct 281770 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAA 281711 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||||||||| || || ||| | || ||||||||||| || |||| Sbjct 281710 AGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGA 281651 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTA 15314 ||||| || || || ||| ||||| ||| || | || || || || | || ||| | Sbjct 281650 ATTCCCTCCTTATCTTGAATCTTTGC-CTTAACGTTCTCAATTGTGTC-CGATGGTTCAA 281593 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||| || || || || ||||||| ||||| |||||||| |||||| Sbjct 281592 CTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCATA 281543 >seq25 Length=676938 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | ||| || || || || | || || || ||||| || |||||||| | Sbjct 542007 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 542066 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | || ||||||| |||||||| ||||| | |||| ||| ||||| || ||| Sbjct 542067 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 542126 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||| |||||| |||||| | || || || || | ||| || Sbjct 542127 ATACCTTCTTTGTCTTGAATCTTTGCT-TTTACATTCTCAATAGTGTCTGAAGGTTCAAC 542185 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || ||||| || || || | ||||||||||||||| ||||| || Sbjct 542186 TTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 542236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179080820407