Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq25 100 2e-16 seq18 87.8 1e-12 >seq25 Length=676938 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | ||| || ||||| || | || ||| ||||||||||| ||||| Sbjct 542006 ACCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGA 542065 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || |||||||||||||| ||||| |||| || || || || | || Sbjct 542066 TAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGG 542125 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||| ||| ||| || | ||| ||| |||| || || || Sbjct 542126 GATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAAC 542185 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || |||||||| || ||||| || ||||| Sbjct 542186 TTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 542233 >seq18 Length=776017 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | |||||| || ||||| | ||| ||| ||||||||||| ||||| Sbjct 281315 ACCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGA 281256 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | |||| || ||||| || |||||||| || || || || || || | || Sbjct 281255 GAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGG 281196 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| |||||| ||| ||| || || | ||| || || | || || || Sbjct 281195 AATTCCTTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAAC 281136 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || || || |||||||| ||||| || ||||| Sbjct 281135 TTCCAAAGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 281088 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | |||||| || ||||||| ||| ||||||||||||||| ||||| Sbjct 281543 ACCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCAGA 281484 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | |||| || ||||| || ||||| || || || ||||| || || | || Sbjct 281483 AAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGG 281424 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || || |||||| ||| ||| || || | ||| || || | || || || Sbjct 281423 AATTCCCTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAAC 281364 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || || || || || || ||||| || ||||| Sbjct 281363 CTCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 281316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777483255996