Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 170 2e-37 >seq1 Length=1292604 Score = 170 bits (188), Expect = 2e-37 Identities = 572/868 (66%), Gaps = 37/868 (4%) Strand=Plus/Plus Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 |||||||||| | ||||| |||||||| || || ||||| |||| | |||||| | Sbjct 164361 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 164420 Query 12921 CCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT----ACACCCTAATTCTAGT 12976 |||| ||||||| ||||| ||| || ||| |||| | | || | | | Sbjct 164421 CCATCCAATCGAAGGGATTA---GAAACATTGTAAATTTTGGGGATATCCAGAG-CAAAA 164476 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC-ACAGTTCATTCCTAT 13035 | | ||| ||||| ||||| || || || || ||| || || | |||||||||| || Sbjct 164477 AGGAGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTAGAGTTCATTCCAAT 164535 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTC---GAT 13092 | | ||||| | | || | ||||||| |||||| |||||| ||||| ||| Sbjct 164536 AAGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGAT 164595 Query 13093 AACTA--TGT-CTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCAT 13149 || | ||| |||| | ||| || | | |||| | || | || | || | Sbjct 164596 AATTTGTTGTACTCTAG--AAGTTGG-TAGTTTAT-ATTTAAGAGCT--TTGTATATTAA 164649 Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 || ||||| ||| || ||||||||||| | || || || || || || ||||| || Sbjct 164650 GCAAGCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAG 164709 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 || |||||||| || || ||||||| ||||||||||||| ||| ||| ||||||| Sbjct 164710 TCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAG 164769 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 |||||||| || || || | || | || ||| || | | || | ||| || Sbjct 164770 AATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTTTCATTATTC-- 164827 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGT 13388 ||||| || | ||||| | |||||| | |||||| |||| |||| || || | Sbjct 164828 -ATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAG-AAATATGAGAAATAGCCT 164885 Query 13389 TAAATAAATAAttt--ttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATA 13446 || ||| |||| ||| || | || |||||| | || || || ||| ||| Sbjct 164886 CAA--AAAGCATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAATA 164943 Query 13447 CATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGA 13506 |||| |||||| | || || || ||||| || ||||| | ||| || |||| Sbjct 164944 TGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGG 165003 Query 13507 TACCTGAACT--TCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTA 13564 | || | | || || ||| | | || |||||||| |||| || || |||||| Sbjct 165004 GATATGTATTTCTCTTAGGAAA--TTGACAGCCAAGTTTTCCATAACAATACCATCACTA 165061 Query 13565 GCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC-GTTTTCTGACAACTTTAA 13623 |||||||| ||||| || | || |||||||| | | | || | | | | ||||| Sbjct 165062 GCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTT-C 165120 Query 13624 CCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGC 13683 ||||||| | ||||| ||| || | ||| ||| |||||| || || | || Sbjct 165121 CCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGC 165180 Query 13684 CTTCTTATACATCATCCATATATCCTTA 13711 || |||||||| | ||| ||||| ||| Sbjct 165181 TTTTTTATACATAAACCAAATATCTTTA 165208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982258179854