Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq25 210 5e-49 seq18 181 2e-40 seq1 123 6e-23 >seq25 Length=676938 Score = 210 bits (232), Expect = 5e-49 Identities = 188/236 (80%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||||||| || | ||| | || || ||||| || || |||||||| || |||||| Sbjct 542007 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 542066 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| ||||||||||| | ||||||||||||||| || || | |||||||||||| || Sbjct 542067 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 542126 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| || |||||||||||||||||||| || | || || |||||| || Sbjct 542127 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACT 542186 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTAC 104568 || | ||| || ||||| ||||| | ||||||||||| |||||||| || | ||| Sbjct 542187 TCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTTCTCTAC 542242 >seq18 Length=776017 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | |||| |||||| || || ||||| |||||||| || ||| Sbjct 281545 ATACCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCA 281486 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||||| ||| || || || || |||| | ||||||||||| Sbjct 281485 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 281426 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || ||||| ||||||||||| ||||||||||| | || || ||||| Sbjct 281425 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 281366 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| || || ||||| || || | |||||| ||||| |||||||| Sbjct 281365 ACCTCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 281316 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | |||| ||| || || || || || |||||||| || ||| Sbjct 281317 ATACCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCA 281258 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || |||| ||| || || ||||| |||| | |||||||||||| Sbjct 281257 GAGAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGT 281198 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||| ||||||||||| ||||||||||| | || || ||||| Sbjct 281197 GGAATTCCTTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 281138 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| || || | || || ||||| |||||||| Sbjct 281137 ACTTCCAAAGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 281088 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || || | ||| | |||||| || || ||||| || ||||| || ||| Sbjct 281773 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 281714 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||||| ||| || || || || |||| | ||||||||||| Sbjct 281713 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 281654 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || ||||| ||||||||||| || || || || | || || ||||| Sbjct 281653 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCA 281594 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || || ||||| || || | |||||| ||||| |||||||| Sbjct 281593 ACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281544 >seq1 Length=1292604 Score = 123 bits (136), Expect = 6e-23 Identities = 335/498 (67%), Gaps = 25/498 (5%) Strand=Plus/Minus Query 269150 GCTGTAGAAGGTATATTCTTTTC-GGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208 ||||||||||| || | ||||| || |||||| ||||| |||||| | || || | Sbjct 164784 GCTGTAGAAGGAATTCTTTTTTCTGGTAGCTTTTG-TGCTATATTTTGGCTTAAAAAGCG 164726 Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 || |||||||| ||| | || |||||||| ||| | || ||| | || ||||| ||||| Sbjct 164725 TGGACTTATGCCTGGACTTACATTCTCTAATGAACTTATTAGCCGTGATGAAGGATTACA 164666 Query 269269 CTGC-GACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAA--GA 269325 ||| ||||| ||||| ||| || ||| || |||| | | |||| | ||| Sbjct 164665 -TGCTGACTTTGCTTGCTTA--ATATAC-AAAGCTCTTAAATATAAAC--TACCAACTTC 164612 Query 269326 TAGAGTATACGAAATTAT---AGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGA 269382 ||||||| | ||||||| ||| ||||||| |||||||| | | ||||| || Sbjct 164611 TAGAGTACAACAAATTATCTCAGA---AGCTGTTGATGTAGAAAGAAACTTTCTTTGTGA 164555 Query 269383 AGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTT 269442 | || || | |||||||| || ||||| | | ||| |||||||| | || Sbjct 164554 CTCACTTCCTGTTGATCTTATTGGAATGAACTCTAGACTTATGGCTCAATATATTGAATT 164495 Query 269443 CGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCC 269502 ||| |||||||| | || | || | | | |||| || || ||| ||||| Sbjct 164494 TGTAGCTGATAGACTCCTTTTTGCTCTGGATATCCCCAAAATTTACAATGTTTCTAATCC 164435 Query 269503 GTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGT 269562 || || ||||| ||| ||| | ||||||| | |||||||| || ||| | || Sbjct 164434 CTTCGATTGGATGGATCTTATTTCACTCCAAGGTAAAACCAATTTCTTTGAAAAGAGAGT 164375 Query 269563 AAGTAACTATCAGAAAATG---GGTGTAATGTCTACTAAAGAAGA-AAATATTTTCACTA 269618 | | |||| ||||| || || ||| || | |||| || || | ||| ||| Sbjct 164374 CGGAGAATATC---AAATGGCTGGAGTTATGGTTAATCAAGATGACCAAAAGTTTGACT- 164319 Query 269619 CAGATGCAGAATTCTAAT 269636 ||||||||||||||||| Sbjct 164318 TAGATGCAGAATTCTAAT 164301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398001688116