Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2 118 2e-22 >seq2 Length=607061 Score = 118 bits (130), Expect = 2e-22 Identities = 189/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | ||| || ||||| |||||||| ||||| || ||||| ||| Sbjct 565457 GCCAAGCGTCATCGTAAGGTTCTCCGTGATAATATCCAAGGTATCACAAAACCAGCCATC 565398 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || | ||||| || |||||| | || | ||| |||| ||||| | Sbjct 565397 CGTCGTCTTGCACGCAGAGGTGGTGTTAAGCGTATTTCCGCCTTGATCTACGAAGAAGTC 565338 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| ||||| ||| | | ||||||||| | ||||| | ||| || ||| Sbjct 565337 AGAGGTGTATTGAAAGCATTCTTGGAAACCGTTATCAAGGATGCAGTTACCTACACTGAG 565278 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 | || | ||||||||| || || | |||||| | || |||| | || | |||| Sbjct 565277 TATGCCAGACGTAAGACCGTTACTGCTATGGATGTAGTTCATGCTCTTAAGAGACAAG-- 565220 Query 16673 CGTAAGA---TTTATGGTTTTGGAAGTTAA 16699 | |||| | || |||||||| ||||| Sbjct 565219 -GAAAGACTCTATACGGTTTTGGTGGTTAA 565191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075175313711