Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 251 9e-62 >seq1 Length=1292604 Score = 251 bits (278), Expect = 9e-62 Identities = 1177/1854 (63%), Gaps = 36/1854 (2%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||| || ||| | |||| || || | |||||| || || || ||||||| Sbjct 444100 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 444041 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || |||| || || |||||||| | || || | | | | | || | | ||| Sbjct 444040 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAAAGTTAGCATTTTCCATA 443981 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || ||||| | ||| ||| || || | | ||||| ||||||||||| | || Sbjct 443980 TGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGATT 443921 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAG 62233 | |||||||| ||| ||||||| |||||||||| | ||| | || | ||| Sbjct 443920 ACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGATT 443861 Query 62234 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | |||| ||||| |||| || ||| || || | | || | | |||| | Sbjct 443860 GTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATTTTGTTTAAGCCTGTCATCC 443801 Query 62292 CATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATGCGGATTAACTACTTGAAATTC 62347 |||| | | | | || || || | || | ||| ||||| ||||| |||||| Sbjct 443800 CATAG----CCCAAGTTCAAGCAAGTCATTGAGTAAATGAGGATTCACTACAAAAAATTC 443745 Query 62348 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATT 62407 ||||| | ||| || ||| || ||||| ||| | ||||| | || || || Sbjct 443744 ACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTT 443685 Query 62408 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 62467 || || ||||| | || || ||||| ||||| || || | | | ||| | || Sbjct 443684 ACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAG 443625 Query 62468 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC---GGTAC 62524 || || | || | ||||| || | ||||| | ||||| | || || Sbjct 443624 CCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTT 443565 Query 62525 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 62584 ||| |||||||||||| ||||| ||| || || ||| || || Sbjct 443564 AACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTC 443505 Query 62585 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 62644 || || || || || || || || || ||||| ||||| | || | |||||||| Sbjct 443504 ATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAAC 443445 Query 62645 TTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGG-ATAATTTAAG 62702 ||| || |||| |||||||| | | | |||| | | ||| |||| ||| ||| Sbjct 443444 TTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTCTGAT-TCATATGGCATACG--AAG 443388 Query 62703 -AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62761 | ||||| || || | ||||||||||||||| || | || | |||| | ||| Sbjct 443387 CATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGATT 443328 Query 62762 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62821 ||| ||| | |||||| | || |||||| ||| | |||||| || | ||| || Sbjct 443327 TGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCCT 443268 Query 62822 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCC---ATCTATTAC 62878 ||| ||| | || ||||| | || ||| || ||| |||| | | Sbjct 443267 CGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTTATCTTTGTC 443208 Query 62879 AAACATGTTC--AAGGC-AACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 62935 || | ||| ||| | || || ||||| |||||||| || | ||||| || | Sbjct 443207 AACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAGT 443148 Query 62936 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 || | ||| || || ||||| | |||||| | ||||| || ||||||| || || Sbjct 443147 GTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGTT 443088 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 |||||| | || || ||||| || ||||| || || || |||||||| |||| Sbjct 443087 ACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAGC 443028 Query 63056 TTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCT----CCTT 63110 || || || ||| | | || | ||||| || || ||| || || | Sbjct 443027 TTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCCT 442972 Query 63111 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 || ||||||| | ||| | | | ||||| || |||||||||| | ||| || Sbjct 442971 GCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCCC 442913 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230 ||||||||||||||||| | | ||| ||| ||| | || || | | |||||| Sbjct 442912 CTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAAT 442853 Query 63231 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63290 |||||||||| |||||| || ||| || || | | ||| ||||| ||||| | Sbjct 442852 AGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGA 442793 Query 63291 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63350 |||||| | | || | ||| ||| || ||| ||||||||| ||||| || || || Sbjct 442792 TTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCA 442733 Query 63351 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63410 || | || ||||| ||| || || || || |||||||| || | ||||||||| Sbjct 442732 ATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACG 442673 Query 63411 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTG 63470 | ||||||||||| | || || || | ||||||||||| ||||| || | Sbjct 442672 CGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGAATATACGAGCCCGTT 442613 Query 63471 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63530 | | ||||||||| | || | || | || || || | ||| || ||| ||| Sbjct 442612 CCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCACAT 442553 Query 63531 CGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63590 | ||| ||||||| | ||||| ||||| ||| || || | |||| |||||| Sbjct 442552 TTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACAA 442493 Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 |||||||| | | ||| || | || || | ||||| | ||| || ||||| Sbjct 442492 GATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAAA 442433 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 | |||| || | || || || || || | || | || ||||| | ||| || Sbjct 442432 TACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTATA 442373 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 || | || | ||||| | || || ||||| || || |||||||| | ||| | Sbjct 442372 CCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCTG 442313 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63824 | | ||||| |||| |||||||| || ||||||| | ||| ||| ||| Sbjct 442312 AGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 442259 Score = 163 bits (180), Expect = 4e-35 Identities = 565/863 (65%), Gaps = 34/863 (4%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||||||||| |||| ||||| || || | ||||| || ||||| ||||| |||| Sbjct 164347 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 164406 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 | ||| ||| ||||| |||| || ||||| | |||||| |||||||| | | Sbjct 164407 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 164466 Query 33120 CAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33179 || || ||| | |||||| || || ||||| |||||| ||| | | | | || Sbjct 164467 CAGAGCAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTT 164526 Query 33180 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 33239 |||||| ||||| | ||| ||||| | || |||||| | | ||| | || || Sbjct 164527 CATTCCAATAAGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGC 164586 Query 33240 ATCTGTTATAATAGATCTAACGGTTTCTTCAC-TCGGTGGATGCAATAAATG---TTTAA 33295 |||| ||||| | || ||| | | ||| | | || | | ||| Sbjct 164587 TTCTGAGATAATTTGTTGTAC----TCTAGAAGTTGGTAGTTTATATTTAAGAGCTTTGT 164642 Query 33296 ACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 | || || || || || || ||| || | || || || | ||||| ||||| || || Sbjct 164643 ATATTAAGCAAGCAAAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGAG 164701 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CC 33413 || || ||||| ||||| || ||||||||||||||||||||||| | | | || | | || Sbjct 164702 AATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCA-CAAAAGCTACC 164760 Query 33414 AGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 33473 |||||| | ||||||||||| ||| || |||||| |||||| || || | || Sbjct 164761 AGAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCT 164817 Query 33474 GTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 || || ||||| || ||||| || || |||||||| || || || Sbjct 164818 TTCATTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGA 164877 Query 33531 TATGGCATTAAAGAG-AT---AGtttttttCATTACTATCTTTAACATAAGTATCGATCA 33586 || || | ||| || || | || ||| ||| || ||| ||| | || || | Sbjct 164878 AATAGCCTCAAAAAGCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATTA 164933 Query 33587 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-T 33645 | | ||| |||| |||||| | ||||| ||||| |||||| | || | ||| | Sbjct 164934 ACAAGGAATATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATT 164992 Query 33646 CTAGCCTCGGTAATCTGTACTTCT-GTACAAAATCGTTCCGCCAAATTTTCATTCACTAT 33704 || || || | || |||| |||| || |||| | | ||||| ||||| | || || Sbjct 164993 CTTGCTTCTGGGATATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAAT 165051 Query 33705 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 33764 || ||||| || ||||| || || | || | ||| ||||||| | | || ||| | Sbjct 165052 ACCATCACTAGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCT 165109 Query 33765 T--AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 | || | | |||||| | |||||| | || || | ||||| |||||| Sbjct 165110 TTAAGACTTTCCCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAAC 165169 Query 33823 GATGCCTCTGCCTTTTTATACAT 33845 ||||| ||||| ||||||||||| Sbjct 165170 GATGCTTCTGCTTTTTTATACAT 165192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946989755320