Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq25 109 5e-19 seq18 102 8e-17 >seq25 Length=676938 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||||||||| |||||||| || | ||||| | ||| | ||| | Sbjct 542236 AAGATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCT 542177 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| || ||| | || ||| ||||||| ||||||||||| || || || ||| Sbjct 542176 TCAGACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGAT 542117 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||| | || || | | || |||||| | ||||| | ||| | | || || Sbjct 542116 CAACAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTAC 542057 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||||||| || |||||| | || |||| ||||||| ||||| || Sbjct 542056 AATATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGACTAAGAGGTGG 542007 >seq18 Length=776017 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| |||||||| || ||||| | ||||| | ||| | ||| || Sbjct 281544 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCG 281603 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || || ||||||| || || || || || || || |||||| Sbjct 281604 GACACAATTGAGAACGTTAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAA 281663 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || || || ||| | ||||||| |||| | || || || Sbjct 281664 CAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 281723 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || |||||||| || ||| | ||| |||| ||||||||||||| |||| Sbjct 281724 ATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGACTTAGAGGTGGAA 281772 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| |||||||| || ||||| | ||||| | || | ||| || Sbjct 281316 ATGCAGATTTTTGTCAAAACATTGACGGGAAAGACAATCACTTTAGAGGTTGAACCATCG 281375 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || || ||||||| || || || || || || || |||||| Sbjct 281376 GACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAA 281435 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || || || ||| | ||||||| |||| | || || || Sbjct 281436 CAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 281495 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| || ||| | ||| | ||| | ||||| ||||| || Sbjct 281496 ATTCAAAAAGAGTCCACTTTACATTTAGTCTTAAGACTCAGAGGTGG 281542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662238451440