Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 201 3e-46 >seq1 Length=1292604 Score = 201 bits (222), Expect = 3e-46 Identities = 401/581 (69%), Gaps = 20/581 (3%) Strand=Plus/Minus Query 22430 CAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGG 22489 || |||| || || ||||| ||||| ||||||||||| |||||| | || || || | Sbjct 164864 CAGTTAAAAAGAAAGCAGAATGGGCAACTAAATGGATGAATAATGAAAGATCTTTTGCTG 164805 Query 22490 AACGTCTTATTGCATTTGCTGTG--GTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTG 22546 | | |||||| ||| ||||| || ||||| ||| | |||||||| ||| ||||||| Sbjct 164804 AGAGAATTATTGGATT--CTGTGCTGTAGAAGGAATTCTTTTTTCTGGTAGC-TTTTGTG 164748 Query 22547 CAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAA 22606 | || |||||||| ||||| |||| | ||||||| || || || || || ||||| | | Sbjct 164747 CTATATTTTGGCTTAAAAAGCGTGGACTTATGCCTGGACTTACATTCTCTAATGAACTTA 164688 Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCA 22666 ||||||| ||||| || | ||| | || ||||| || | |||| || | | | Sbjct 164687 TTAGCCGTGATGAAGGATTACATGCTGACTTTGCTTGCTTAATATA---CAAAGCTCTTA 164631 Query 22667 TTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAAC 22726 ||||||| ||| | | |||| | ||||| || | || ||||| | ||| Sbjct 164630 AATATAAACTACCAACTTCTAGAGTACAACAAATTATCTCAGAAGCTGTTGATGTAGAAA 164571 Query 22727 GTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGA 22786 | ||| |||| || | | || || ||| ||||| || || | | ||| Sbjct 164570 GAAACTTTCTTTGTGACTCACTTCCTGTTGATCTTATTGGAATGAACTCTAGACTTATGG 164511 Query 22787 GTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT-GCAAAGCAT 22845 | ||||||| ||||||| || ||| | || | || | || || ||| | || | Sbjct 164510 CTCAATATATTGAATTTGTAGCTGATAGACTCCTTTTTGCTCT-GGATATCCCCAAAATT 164452 Query 22846 TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAAT 22905 || || || |||||| || || |||||||| ||||||||||| |||| || |||||| Sbjct 164451 TACAATGTTTCTAATCCCTTCGATTGGATGGATCTTATTTCACTCCAAGGTAAAACCAAT 164392 Query 22906 TTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCATTGAATGAT 22965 ||||| ||||| ||||| || ||||| |||| || || ||||||| | | | || ||| Sbjct 164391 TTCTTTGAAAAGAGAGTCGGAGAATATCAAATGGCTGGAGTTATGGTT--AATCAA-GAT 164335 Query 22966 AGTTCAAAACACGGATTTACATTAGATGAAGAATTTTAATT 23006 | ||||| | || || ||||||| |||||| ||||| Sbjct 164334 -GACCAAAA----GTTTGAC-TTAGATGCAGAATTCTAATT 164300 Score = 178 bits (196), Expect = 3e-39 Identities = 575/883 (65%), Gaps = 10/883 (1%) Strand=Plus/Plus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||||| || | || || ||| | ||||| | ||| || |||||| |||||| ||| Sbjct 442329 ATTGTAGAGAGACCACAACATCTTCTAATGAGAGTTTCTTGTGGTATACATTGCGGTGAT 442388 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC-ACGCACGCCAC 363560 | || || || | ||||||||||| || | | || ||||| || || || || Sbjct 442389 ATCGAGGCTGCACTCGAAACATATAAA-TTATTATCGCAAAAGTATTTTACCCATGCTAC 442447 Query 363561 GCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAA 363620 || || | | ||| | || |||| | || || ||||| ||||| ||| | || | Sbjct 442448 ACCTACGCTTTTCAACTCCGGCACTCCAAGACCTCAAATGTCATCTTGTTTTTTACTCAG 442507 Query 363621 AATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTC 363680 ||| || ||||| || || ||||| |||||||| || | || ||||| |||| Sbjct 442508 AATACCAGAGGATTCTATAGATGGTATTTTTGACACGCTAACAAAATGTGCAAATATTAG 442567 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACAT 363740 |||| ||| ||||| |||| || | | ||| || | | | | | || || Sbjct 442568 TAAGACTGCCGGCGGTCTTGGAGTGGCAGTGAGTAATATTAGAGGAACGGGCTCGTATAT 442627 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || || ||| || ||||| ||| |||| ||| | || || | | | |||| Sbjct 442628 TCGGGGTACCAATGGAAGGTCTAATGGACTGATTCCAATGTTACGCGTTTATAATGATAC 442687 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGA 363860 ||| || || | ||||| |||||||| || ||||| || ||| |||| || ||| | || Sbjct 442688 TGCTAGATATATTGACCAAGGTGGAGGGAAACGCAAGGGTGCGATTGCAATTTATTTGGA 442747 Query 363861 GCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGA 363920 ||| |||| ||| || | |||||| |||| | | || || ||||||||||| Sbjct 442748 GCCGTGGCATGTAGATGTTGTGGAGTTTATTGAAATAAGAAAGAATCATGGAAAAGAGGA 442807 Query 363921 ATTGCG-TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCG 363979 || | ||| ||||| || || ||| ||||||||| |||| | |||||| || | | Sbjct 442808 GATGAGATGC-CGTGACCTCTTTCCTGCCCTTTGGGTTCCTGATCTATTTATGGAGAGGG 442866 Query 363980 TGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC--GA 364037 | ||| || | ||||| | || | || || | ||||| |||| || | || Sbjct 442867 TTGAGAAAGACCAAGATTGGACTCTTATGTGTCCGGATGAATG--CAGGGGGTTGCAAGA 442924 Query 364038 TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCG 364097 ||| |||||||| || | | ||||| ||| |||| ||| | |||| | | Sbjct 442925 TGTTTGGGGTGATGAGTTTAAGAAACTATATGAAGAGTACGAAAAGCAGGGCCGCGGAAG 442984 Query 364098 TAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157 || || || || ||||| || |||||| ||| | | | || ||||| ||||| Sbjct 442985 AAAAACTATGAAGGCGCAGAAACTTTGGTTTTTAATCCTACAAGCTCAAATTGAAACAGG 443044 Query 364158 AACACCCTATATGTTGTACAAAGATTCGTGC-AACCGCAAGTCCAACCAGCAGCACCTTG 364216 ||| || | || | ||||| || | ||| || | ||| |||||| | | | | Sbjct 443045 AACGCCTTTCATCTGCTACAAGGACGC-TGCGAATAGTAAGAGTAACCAGAAAAATTTGG 443103 Query 364217 GTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 | || ||| || || |||| ||||| ||||| || ||||| | | || | Sbjct 443104 GGACTATTGTTTCCAGTAATTTATGCACCGAAATTATAGAGTACACTAGCGCAAATGAAA 443163 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 ||| || |||||||| ||||| || | |||||| |||||| Sbjct 443164 TTGCTGTTTGTAACCTGGCGTCCATTGGTCTTCCGAAGTTTGT 443206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353149121114