Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 246 4e-60 >seq1 Length=1292604 Score = 246 bits (272), Expect = 4e-60 Identities = 1179/1856 (64%), Gaps = 40/1856 (2%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||| || ||| | |||| || || | |||||| || || || ||||||| Sbjct 444100 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 444041 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || |||| || || |||||||| | || || | | | | | || | | ||| Sbjct 444040 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAAAGTTAGCATTTTCCATA 443981 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || ||||| | ||| ||| || || | | ||||| ||||||||||| | || Sbjct 443980 TGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGATT 443921 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAG 62088 | |||||||| ||| ||||||| |||||||||| | ||| | || | ||| Sbjct 443920 ACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGATT 443861 Query 62089 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | |||| ||||| |||| || ||| || || | | || | | |||| | Sbjct 443860 GTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATTTTGTTTAAGCCTGTCATCC 443801 Query 62147 CATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATGCGGATTAACTACTTGAAATTC 62202 |||| | | | | || || || | || | ||| ||||| ||||| |||||| Sbjct 443800 CATAG----CCCAAGTTCAAGCAAGTCATTGAGTAAATGAGGATTCACTACAAAAAATTC 443745 Query 62203 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 62262 ||||| | ||| || ||| || ||||| ||| | ||||| | | || || || Sbjct 443744 ACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTT 443685 Query 62263 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 62322 || || ||||| | || || ||||| ||||| || || | | | ||| | || Sbjct 443684 ACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAG 443625 Query 62323 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC---GGTAC 62379 || || | || | ||||| || | ||||| | ||||| | || || Sbjct 443624 CCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTT 443565 Query 62380 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 62439 ||| |||||||||||| ||||| ||| || || ||| || || Sbjct 443564 AACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTC 443505 Query 62440 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 62499 || || || || || || || || || ||||| ||||| | || | |||||||| Sbjct 443504 ATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAAC 443445 Query 62500 TTCGAAGATCTTCTTATTTAGAT--CTTGCGCTTCCAGGCTATCAAATGG-ATAATTTAA 62556 ||| || |||| |||||||| | || || |||| | | ||| |||| ||| || Sbjct 443444 TTCAAAAATCTCCTTATTTAATTTCCTAGC-CTTCTCTGAT-TCATATGGCATACG--AA 443389 Query 62557 G-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62615 | | ||||| ||||| | ||||||||||||||| || | || | |||| | || Sbjct 443388 GCATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGAT 443329 Query 62616 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62675 | ||| ||| | |||||| | || |||||| ||| | |||||| || | ||| | Sbjct 443328 TTGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCC 443269 Query 62676 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCC---ATCTATTA 62732 | ||| ||| | || ||||| | || ||| || ||| |||| | Sbjct 443268 TCGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTTATCTTTGT 443209 Query 62733 CAAACATGTTCA-ATG--CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62789 ||| | ||| | | ||| || ||||| |||||||| || | ||||| || | Sbjct 443208 CAACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAG 443149 Query 62790 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 62849 || | ||| || || ||||| | |||||| | || || || ||||||| || | Sbjct 443148 TGTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGT 443089 Query 62850 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 62909 ||||||| | || || ||||| || ||||| || || || |||||||| |||| Sbjct 443088 TACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAG 443029 Query 62910 ATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCT----CTT 62964 || || || ||| | | || | ||||| || || ||| || | Sbjct 443028 CTTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCC 442973 Query 62965 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCC 63024 | || ||||||| | ||| | | | ||||| || |||||||||| | || || Sbjct 442972 TGCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCC 442914 Query 63025 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63084 ||||||||||||||||| | | ||| ||| ||| | || || | | |||||| Sbjct 442913 CCTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAA 442854 Query 63085 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 |||||||||| |||||| || ||| || || | | ||| ||||| ||||| Sbjct 442853 TAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATG 442794 Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 ||||||| | | || | ||| ||| || ||| ||||||||| ||||| || || || Sbjct 442793 ATTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGC 442734 Query 63205 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63264 || | || ||||| ||| || || || || |||||||| || | ||||||||| Sbjct 442733 AATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAAC 442674 Query 63265 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCTGAGATATAGCTTCCAC 63323 | ||||||||||| | ||||| || | |||||||| ||| || ||||| || Sbjct 442673 GCGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGA-ATATACGAGCCCG 442615 Query 63324 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63383 | | | ||||||||| | || | || | || || || | ||| || ||| | Sbjct 442614 TTCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCAC 442555 Query 63384 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 63443 || | ||| ||| ||| | || || |||||| ||| || || | |||| ||||| Sbjct 442554 ATTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAAC 442495 Query 63444 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAA 63503 | |||||||| | | ||| || | || || | ||||| | ||| || |||| Sbjct 442494 AAGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAA 442435 Query 63504 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63563 | | |||| || | || || || || || | || | || ||||| | ||| | Sbjct 442434 AATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTA 442375 Query 63564 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63623 | || | || | ||||| | || || ||||| || || |||||||| | ||| Sbjct 442374 TACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTC 442315 Query 63624 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63679 | | | ||||| |||| |||||||| || ||||||| | ||| ||| ||| Sbjct 442314 TGAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 442259 Score = 206 bits (228), Expect = 3e-48 Identities = 581/875 (66%), Gaps = 34/875 (4%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||||||||| |||| ||||| || || | ||||| || ||||| |||||||||| Sbjct 164347 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 164406 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 | ||| ||| ||||| ||||||| ||||| | |||||| |||||||| | | Sbjct 164407 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 164466 Query 32477 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 32536 || || ||| | |||||| || |||||||| |||||| ||| | | | | || Sbjct 164467 CAGAGCAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTT 164526 Query 32537 CATTCCTATAAGTTTAACTGGAAG--AGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 |||||| ||||| | ||| ||||| || |||| |||||| | | ||| | | || Sbjct 164527 CATTCCAATAAGATCAACAGGAAGTGAGTCACA--AAGAAAGTTTCTTTCTACATCAACA 164584 Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTA 32651 || |||| ||||| | |||| | | | ||| | | || | | ||| Sbjct 164585 GCTTCTGAGATAATTTGTTGTACTCTAGA---AGTTGGTAGTTTATATTTAAGAGCTTTG 164641 Query 32652 AACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 32710 | || || || || || || ||| |||| || || || | ||||| | ||| || || Sbjct 164642 TATATTAAGCAAGCAAAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGA 164700 Query 32711 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-C 32769 || || ||||| ||||| || ||||||||||||||||||||||| | | |||| | | | Sbjct 164701 GAATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTAC 164759 Query 32770 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 32829 ||||||| | |||||||||||| || || |||||| |||||| || || | | Sbjct 164760 CAGAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATC 164816 Query 32830 TGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 | || || ||||| || ||||| || || |||||||| || || || Sbjct 164817 TTTCATTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAG 164876 Query 32887 CTATAGCATTAAAGAG-AT---AGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 ||||| | ||| || || | || ||| ||| || ||| |||| | ||||| Sbjct 164877 AAATAGCCTCAAAAAGCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATT 164932 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 || | ||| |||| |||||| | ||||| |||||||||||| | || | | Sbjct 164933 AACAAGGAATATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATT 164992 Query 33003 CTAGCCTCGGTAATCTGTACTTCT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33061 || || || | || |||| |||| || |||| | | || || ||||| | || || Sbjct 164993 CTTGCTTCTGGGATATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAAT 165051 Query 33062 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 33121 || ||||| || ||||| || || | || | ||| ||||||| | | || ||| | Sbjct 165052 ACCATCACTAGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCT 165109 Query 33122 T--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 | || | | |||||| | |||||| | || || | ||||| |||||| Sbjct 165110 TTAAGACTTTCCCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAAC 165169 Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGATGTC 33214 ||||| ||||| |||||||||||| ||| || || Sbjct 165170 GATGCTTCTGCTTTTTTATACATAAACCAAATATC 165204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631786149200