Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq18 134 3e-26 seq25 132 1e-25 >seq18 Length=776017 Score = 134 bits (148), Expect = 3e-26 Identities = 171/234 (73%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 ||||| |||||| | ||||| | ||| | ||| | ||| |||||||||||||| || Sbjct 281776 TACAT-TCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTA 281718 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 || | || || | ||| ||||||||||| || ||||||||||| | ||| |||||| Sbjct 281717 ATCAGAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATC 281658 Query 288360 ATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 | ||| ||||| || ||||| || || || || || ||||| || || | || | Sbjct 281657 AGGTGGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGG 281598 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| | ||||| ||||| || |||| || ||||| || |||||||| Sbjct 281597 TTCAACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281544 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | |||||| | || | ||| | ||| |||||||| ||||| || || | Sbjct 281542 CCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCAGAA 281483 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||||||||| || ||||||||||| | ||| |||||| | ||| Sbjct 281482 AGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGA 281423 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || ||||| || || || || || || ||||| || | || | ||| || Sbjct 281422 ATTCCCTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACC 281363 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || |||| || ||||| || |||||||| Sbjct 281362 TCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 281316 >seq25 Length=676938 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| ||||| || || | || || | |||||||| ||||||||||| || ||| Sbjct 542043 TCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAG 542102 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||||||| | |||||| |||||||| || || || || ||||| || || Sbjct 542103 ATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTC 542162 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || | ||| ||||| | ||||| |||||||| || | ||| || || Sbjct 542163 TCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACA 542222 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 542223 AAAATCTGCAT 542233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653991913306