Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq18 98.7 1e-15 seq25 95.1 1e-14 >seq18 Length=776017 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289 |||| |||| ||| | || || || |||||||| |||||||| | || || | | | Sbjct 281300 TAAG-ACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCAT 281242 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 | || | ||||| || ||| | || | ||||| || || || ||||||||||| || | Sbjct 281241 CCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTAT 281182 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 |||| || ||| ||||||| || | ||| || | || ||||| | ||| | | Sbjct 281181 CTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTG 281122 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || |||||||| || || ||||| ||||| Sbjct 281121 TCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 281088 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289 |||| |||| ||| | || || ||||||||||| |||||||| | | || | | | Sbjct 281528 TAAG-ACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCAT 281470 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 |||| | ||||| || || | || | || || || || || |||||||| || || | Sbjct 281469 CTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTAT 281410 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 |||| || ||| ||||||| || | ||| || | || || |||| ||| | | Sbjct 281409 CTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAAAGTGATTG 281350 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || ||||| ||||| || ||||| ||||| Sbjct 281349 TCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 281316 >seq25 Length=676938 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || |||||||| |||||||| | | || | ||||||| | || || || Sbjct 542037 GTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCA 542096 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || ||||| || || || || || |||||||| ||||| || ||| ||| Sbjct 542097 GCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTCTTGAATCTTTGCTTTT 542156 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || ||||| | || | |||||| || || |||||| Sbjct 542157 ACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTT 542216 Query 64427 TTTACGAAAATTTGCATTTT 64446 ||||| ||||| ||||| || Sbjct 542217 TTTACAAAAATCTGCATCTT 542236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644631369880