Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq18 141 7e-29 seq25 134 1e-26 >seq18 Length=776017 Score = 141 bits (156), Expect = 7e-29 Identities = 175/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||||| |||||||| | || || || ||||| || |||||||| | Sbjct 281314 CCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAG 281255 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || |||||||| || || || | || ||||||||||| || |||| Sbjct 281254 AGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGA 281195 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTA 15127 ||||||||||| || ||| ||||| |||||| |||| || || || | || ||| | Sbjct 281194 ATTCCTTCCTTATCTTGAATCTTTGC-CTTTACATTTTCAATTGTGTC-CGATGGTTCAA 281137 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 | || || || || || || ||||||| ||| || |||||||| |||||| ||| Sbjct 281136 CTTCCAAAGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATAATTG 281083 Score = 140 bits (154), Expect = 2e-28 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||||| |||||||| | || || |||||||| || |||||||| Sbjct 281542 CCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCAGAA 281483 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||||||| || || ||| | || ||||| ||||| || |||| Sbjct 281482 AGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGA 281423 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTA 15127 ||||| ||||| || ||| ||||| |||||| |||| || || || | || ||| | Sbjct 281422 ATTCCCTCCTTATCTTGAATCTTTGC-CTTTACATTTTCAATTGTGTC-CGATGGTTCAA 281365 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| || || || || || |||| ||||| |||||||| |||||| Sbjct 281364 CCTCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCATA 281315 Score = 122 bits (134), Expect = 6e-23 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| || || ||||| | || || |||||||| || |||||||| Sbjct 281770 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAA 281711 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||||||| || || ||| | || ||||| ||||| || |||| Sbjct 281710 AGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGA 281651 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTA 15127 ||||| ||||| || ||| ||||| || || | || || || || | || ||| | Sbjct 281650 ATTCCCTCCTTATCTTGAATCTTTGC-CTTAACGTTCTCAATTGTGTC-CGATGGTTCAA 281593 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| || || || || ||||||| ||||| |||||||| |||||| Sbjct 281592 CTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCATA 281543 >seq25 Length=676938 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| || || || || | ||||| || ||||| || |||||||| Sbjct 542007 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 542066 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | || ||||||| |||||||| ||||| | |||| ||||||||| || ||| Sbjct 542067 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 542126 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||| ||||| ||| ||||||||| ||| | || ||||| || | ||| || Sbjct 542127 ATACCTTCTTTGTCTTGAATCTTTGCTTTT-ACATTCTCAATAGTGTCTGAAGGTTCAAC 542185 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || || || | ||||||||||||||| ||||| || Sbjct 542186 TTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 542236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391882395695