Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq13 268 4e-66 seq25 233 8e-56 seq18 179 1e-39 seq4 134 5e-26 seq7 122 3e-22 seq24 116 1e-20 seq26 113 2e-19 seq1 98.7 4e-15 seq27 95.1 5e-14 seq9 95.1 5e-14 >seq13 Length=315713 Score = 268 bits (296), Expect = 4e-66 Identities = 1047/1616 (65%), Gaps = 65/1616 (4%) Strand=Plus/Minus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 ||| ||||| |||||| | || ||||| | || ||||| ||||| | ||||| | Sbjct 112033 AGCTATTGGTATTGATTTAGGTACCACATACTCGTGTGTTGGTGTATGGAGAAATGATAC 111974 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTAC 451032 ||||| ||| | ||||||| ||||| || || || || |||| ||| ||||| Sbjct 111973 AGTAGATATTGTTCCAAATGATCAAGGTAACCGTACAACACCATCATATGTAGCATTTAC 111914 Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAA 451090 || | || | || | || | || || || | ||| || | |||| | | Sbjct 111913 AGAGACTGAGCGTCTCATTGGAGATGCAGCAAAGAACCAA--GTTGCTAGAAATCCAGAT 111856 Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 || ||||| | ||||||||||||| | ||||| | | | ||| || | | || ||| Sbjct 111855 AATACAGTCTTTGATGCTAAACGTCTTATTGGTAGAAAATTTGACGACCAGGCAGTGCAA 111796 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAAT---CAAAAAGGAAAGCCCTATATT 451207 | || | | || | | | | |||| | | ||||| || || |||| Sbjct 111795 AGTGATATGACTCACTGGCCATTTAAAATAGTTAGAGGCCCAAAAGACAAACCAATTATT 111736 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 |||| |||| |||||| | || || | ||||||||||||| |||||||| Sbjct 111735 AGTGTAAGTTATTTAGGTGAGAAGAAGGAATTCCATGCTGAAGAAATTTCTGCTATGGTT 111676 Query 451268 CTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326 |||| ||| ||||| || | | ||| ||| | || ||| ||| |||| || Sbjct 111675 -TTACAAAAGATGAAGGAGATTTCTGAAGCATACTTGGGACGCCCAATTAAGAATGCCGT 111617 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 | ||||||| || |||||||||||||| | ||||| ||||||||||| |||||||| Sbjct 111616 AGTTACTGTACCAGCTTATTTCAATGACTCTCAACGTCAAGCAACTAAGGATGCAGGTGC 111557 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 ||||||||||||||||| | |||||||||| ||||| ||||| || ||| | || || Sbjct 111556 AATTGCTGGTTTAAATGTAATGAGAATTATTAACGAACCAACAGCCGCAGCTATTGCTTA 111497 Query 451447 TGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 ||| || | || || | ||| | || | |||| |||| | || ||||| ||||| Sbjct 111496 TGGTCTTGATAA---GAAGGGAACTGGTGAGAGAAATGTTTTGATCTTCGATTTGGGTGG 111440 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || || |||| || || | | ||||| ||||| | ||||| || ||||| || Sbjct 111439 TGGTACATTTGATGTATCATTATTAACTATTGAGGATGGTATCTTTGAGGTTAAGGCTAC 111380 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGAATGGTTGAA 451626 |||||||||||| |||| ||||||||| ||||||| | |||| |||| ||| Sbjct 111379 TGCTGGTGATACTCACTTAGGTGGTGAAGATTTTGATAACAGACTTGTAGAAT-TTTGCG 111321 Query 451627 AAC-TGATGTTCAACGAAA-ACTAAAAGTA--GATATTTCTACTAACCAAAAAGCACTTA 451682 || || || | |||| | || | ||| ||| | |||| || | ||| | | Sbjct 111320 TACAAGACTTTAAGAGAAAGAATAGAGGTATGGATTTAACTACAAATGCCAGAGCTTTAA 111261 Query 451683 GACGTCTTAAAACATCAGCAGAA-----AAAGCTAAAATTACACTCAGTTCAACACAAAC 451737 || | | | ||| | ||| |||| || ||| || |||||| ||| | Sbjct 111260 GAAGATTAAGAACTCAATGTGAACGTGCAAAGAGAACTTTATCATC--TTCAACTCAAGC 111203 Query 451738 TACTAGTATAAACATTGAT--AGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACC 451795 ||| ||| | | ||| | |||| ||| || || |||||| | | | | ||| Sbjct 111202 TAC---TATTGAGTTGGATTCACTTTA--TGAAGGTATTGATTATTCAATTGCCATTAGT 111148 Query 451796 CGTGCTAAATTTGAATCAATTTGTTCCAGTATTTTTGCACGGGTAA---TGAAACCTGTT 451852 | |||| ||||||| | | ||| | ||| | | || | || | || ||| Sbjct 111147 AGAGCTAGATTTGAAGAACTCTGTGC--TGATTACTTC-CGTGCAACTTTAGCTCCAGTT 111091 Query 451853 GATCAAGTATTACATGATTCTAAAAT-TAGTAAAGATAAAATTGATGAAATTGTGCTTGT 451911 || ||||| | | ||| || || | |||||| | |||| |||| | || Sbjct 111090 GAGAAAGTACTCAAGGATGCTGGTATGGACAAAAGAT-CTGTACATGATGTTGTTTTGGT 111032 Query 451912 AGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTCTTCTTATTTTGGAG 451967 || |||||||| || ||||| || | |||| || | | ||| ||| | Sbjct 111031 TGGTGGTTCTACTCGTATTCCAAAGGTCCAAGCCTTGATTCAGGAATTC----TTTAATG 110976 Query 451968 GAAAACAACTATGTAAGAGC-GTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026 |||| | | ||| || ||| | || || |||||||||||||| ||||||||||| || Sbjct 110975 GAAAGGAGCCATGCAA-AGCAATTAACCCAGATGAAGCTGTTGCCTATGGTGCTGCTGTA 110917 Query 452027 CAAGCAGCTATTCTAACAGGT------TCAGATGATGAAAAATTAGGAGATATTCTGTTA 452080 ||||| ||||| ||| ||| || || || | || ||| | ||||| Sbjct 110916 CAAGCTGCTATCTTAAATGGTGAGCAATCTTCTGCTG----TTCAG--GATCTCTTGTTA 110863 Query 452081 GTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTA 452140 ||||||| | || |||| ||||| | ||||| |||||||| | |||||||| | Sbjct 110862 TTAGATGTTGCTCCATTATCACTTGGTTTGGAAACTGCTGGTGGTGTTATGACTAAGCTT 110803 Query 452141 ATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGAT 452200 ||| | || || |||| || ||||||| ||| |||| || ||| Sbjct 110802 ATTGAGCGTAACACAACTATCCCAGCCAAAAAGACACAAGTCTTTACCACTTATGCCGAT 110743 Query 452201 AACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAAT 452260 |||||| |||||| |||||||| | |||||| ||| | || ||||| ||||| Sbjct 110742 AACCAAAGCGGTGTATTAATTCAAGTCTATGAAGGTGAAAGAGCCATGACTAAGGATAAC 110683 Query 452261 AATAAACTAGGAGAATTTACTCTTTCA-AACATTCCTCCTATGCCAAGGGGAACTCCTCA 452319 | || ||| || || | | || | ||||| || ||||| || || || Sbjct 110682 CACCTTCTTGGA-AAGTTCCACCTTGATGGTATTCCACCAGCACCAAGAGGTGTACCACA 110624 Query 452320 AATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AA 452378 |||||| | || | |||| ||||||| ||||||||| | || || || || || || Sbjct 110623 AATTGAGGTCACTTTTGATATTGATGCTAATGGTATTTTGAACGTATCCGCTGTCGATAA 110564 Query 452379 AATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAG 452438 | | | | |||| || || || ||||||||||| ||||| | ||||| || | Sbjct 110563 GAGTACCGGTAAAAGTAG-CAAGATCACAATTACTAACGATAAGGGTAGATTATCAAAGG 110505 Query 452439 AAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAACAA 452494 | ||||| ||| ||||| |||| || || |||| ||||| ||| ||||||||| Sbjct 110504 ATGATATCGAACGTATGGTTAATGATGCTGAGAAATACAAGGGTGAGGATGAACAA 110449 >seq25 Length=676938 Score = 233 bits (258), Expect = 8e-56 Identities = 465/683 (68%), Gaps = 13/683 (2%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| |||||| | || || || | ||||||||| ||| ||||| | ||||| | ||| Sbjct 82931 ATTGGTATTGATTTAGGTACTACTTATTCATGTGTTGGTATTTACAAGAATGGTAGAGTA 82990 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 |||||||| ||||||| ||||| || | ||| || || | ||| ||||| ||| Sbjct 82991 GAAATTATTCCAAATGAACAAGGTAACCGTATTACACCATCTTATGTATCATTTACTGAT 83050 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAAAT-CAATGGTAAATTCAAATGCCAAAAACAC 451095 |||||| | | || | | |||||| | | | || | |||| | | | || Sbjct 83051 GATGAAAGATTAATCGGTGAGTCAGCTAAAAACCAGGCTACAATCAA-TCCGGTTCAGAC 83109 Query 451096 AGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGA 451155 | | ||||| || | | ||||||||| | | |||||| | || ||||| || Sbjct 83110 CTTGTTTGATGTAAAGAGACTTATTGGCCGTCGTTTCAAGGATGATTCCGTCCAAAAGGA 83169 Query 451156 GAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAA 451215 || | ||| || | ||||| | | ||| || || | ||||| || ||||| || | Sbjct 83170 TAAGACATTGTTACCATATGAAATTATTAATAAAGAAAGTAAGCCTTACATTCAGGTTAC 83229 Query 451216 TTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAA 451275 |||||| || | || || ||||| || ||| |||| ||||||| ||| || | Sbjct 83230 AGTTAAAGGCGAGAAGAAGCAGTTAGCTCCAGAGGAAGTTTCTGCTATGGT-CTTGCTTA 83288 Query 451276 A-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTG 451334 | |||||||| | || ||| ||| | || || | | ||||||||||||| Sbjct 83289 AGATGAAAGAGATTGCTGAAGCTTATCTCGGAAAGGAGGTAAAACACGCAGTAATTACTG 83348 Query 451335 TTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTG 451394 | || ||||| || |||||||| ||||| ||||| ||||| || || || ||||||| Sbjct 83349 TACCAGCTTACTTTAATGATGCTCAACGTCAAGCCACTAAGGACGCTGGTGCCATTGCTG 83408 Query 451395 GTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454 |||| ||||| |||| |||||||| ||||| |||||||| ||| | || | ||| ||| Sbjct 83409 GTTTGAATGTAATTCGTATTATTAACGAACCAACAGCAGCAGCTATTGCTTTTGGTTTAG 83468 Query 451455 GAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTC 451514 | ||||| | || || | || || || | |||||| ||||| || ||| Sbjct 83469 -------ATAAGAA--GGCTGAGAAGAGCATCTTGGTGTATGATTTGGGTGGTGGTACTT 83519 Query 451515 ATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTG 451574 |||| ||| | | | ||||| |||||||||||||||| || || | ||||| Sbjct 83520 TTGATGTTTCACTCTTGACCATTGATAATGGGGTATTTGAAGTCGTTGCCACAAGTGGTG 83579 Query 451575 ATACTCATCTAGGAGGTGAAGAT 451597 |||| ||| |||||||||| ||| Sbjct 83580 ATACCCATTTAGGAGGTGAGGAT 83602 Score = 131 bits (144), Expect = 7e-25 Identities = 290/432 (67%), Gaps = 11/432 (3%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 || || |||||||| ||||| ||||||||||| || ||||| | ||| || |||| Sbjct 83996 AACCCAGATGAAGCCGTTGCCTATGGTGCTGCTGTACAAGCCGGTATATTAGCAGGC--- 84052 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 || | || | | ||| | || ||| | ||||| || ||| | || | || || Sbjct 84053 GAGGGTGGTA------GTGATTTACTATTATTGGATGTTACTCCTTTGACTTTGGGTATT 84106 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAA 452170 || || | ||||||| | ||||| || | ||| || || | |||| ||| Sbjct 84107 GAGACTGTTGGTGGAGTTATGACCAAGCTCATTGGTAGAAACACAGTTGTTCCAACCAAA 84166 Query 452171 AAGAGTCAAACATTTAGTACAG-CAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTT 452229 ||||| || || ||||| | || ||||||||||||| ||| |||||| || | Sbjct 84167 AAGAGCCAGGTTTTCAGTACTTACCAG-GATAACCAACCAGCCGTACTTATTCAGGTTTA 84225 Query 452230 TGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAA 452289 ||| || |||||| ||||||| || || || ||| ||| | ||| ||||| Sbjct 84226 TGAGGGTGAACGTCCAATGACCAAGGACAACAACCTACTCGGAAAGTTTGAGCTTTCTGG 84285 Query 452290 CATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAA 452349 |||||||| ||||| || |||||| ||||| |||||| ||| ||||| | | Sbjct 84286 AATTCCTCCAGCTCCAAGAGGTGTTCCTCAGATTGAGGTTACCTTTGAAATTGATACTGA 84345 Query 452350 TGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAAT 452409 |||||| | | || |||||| || ||| |||| ||||| || || ||||| || Sbjct 84346 CGGTATTTTACAAGTCAGTGCAAAAGATAAAGGTACTGGTAAATCTGAGAAGATTACTAT 84405 Query 452410 TACTAATGATAA 452421 || |||||||| Sbjct 84406 CACAAATGATAA 84417 Score = 120 bits (132), Expect = 1e-21 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| | ||||| || || || || | || |||||| | || Sbjct 542233 ATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCTTCA 542174 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | ||| ||| |||||||| || ||||| || || ||||||||| Sbjct 542173 GACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAA 542114 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || |||||| | ||||| || || ||| | | ||||| ||| Sbjct 542113 CAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTACAAT 542054 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| | || | ||||| ||||| ||||| ||||| Sbjct 542053 ATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGACTAAGAGG 542010 >seq18 Length=776017 Score = 179 bits (198), Expect = 1e-39 Identities = 174/224 (78%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || |||||| |||| || || || || ||| | || |||||| |||| Sbjct 281316 ATGCAGATTTTTGTCAAAACATTGACGGGAAAGACAATCACTTTAGAGGTTGAACCATCG 281375 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || ||| |||||||||||||| |||||||| ||||||||| Sbjct 281376 GACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAA 281435 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||||||||| ||| ||||||| ||| | ||||||||||||||| | | ||||| ||| Sbjct 281436 CAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 281495 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | || || | || | || ||||| |||||||| ||||| Sbjct 281496 ATTCAAAAAGAGTCCACTTTACATTTAGTCTTAAGACTCAGAGG 281539 Score = 170 bits (188), Expect = 8e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | ||||| ||||| || |||| || || || || ||| | || |||||| || Sbjct 281085 ATTATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACAATCACTTTGGAAGTTGAACCA 281144 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || || | |||||| | | || ||| ||||||||||||||||||||||| |||||| Sbjct 281145 TCGGACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAAGGAATTCCACCTGAT 281204 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 ||||| |||||||| || ||||||| ||| | || |||||||||||| | | ||||| Sbjct 281205 CAACAGCGTTTAATCTTTGCAGGGAAGCAATTAGAGGATGGAAGAACTCTCTCTGATTAC 281264 Query 391227 AATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 |||||| | ||||| | || | || ||||| |||||||| ||||| Sbjct 281265 AATATTCAAAAGGAGTCCACTTTGCATTTAGTCTTAAGACTCAGAGG 281311 Score = 165 bits (182), Expect = 3e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || |||||| |||| || || || || ||| | || |||||| |||| Sbjct 281544 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCG 281603 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| |||| ||| |||||||||||||| |||||||| ||||||||| Sbjct 281604 GACACAATTGAGAACGTTAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAA 281663 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||||||||| ||| ||||||| ||| | ||||||||||||||| | | ||||| ||| Sbjct 281664 CAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 281723 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | || || | || | || || ||||| ||||| ||||| Sbjct 281724 ATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGACTTAGAGG 281767 >seq4 Length=889257 Score = 134 bits (148), Expect = 5e-26 Identities = 284/420 (68%), Gaps = 9/420 (2%) Strand=Plus/Plus Query 364565 TATTCCATCTTTAGTTGATGGATTTAAACCTTCTCAAAGAAAAATTTTTTATGGAGCAAA 364624 ||||||| |||| | |||||||| |||||| |||||||| | ||| || | || Sbjct 4755 TATTCCAAATTTATTAGATGGATTAAAACCTGGACAAAGAAAGGTACTTTTTGCAACA-- 4812 Query 364625 TTTAAGAGGATTAGAAAAAGATCAAGTAAAAGTAGCTCAATTAGCAGGTTTTGTATCTGA 364684 ||||||| || || | || || | || || | |||||||| |||| ||| |||| Sbjct 4813 TTTAAGAAGAAACTTAATA-ATGAACTTAAGGTTGTACAATTAGCTGGTTATGTTGCTGA 4871 Query 364685 CCGGGTAGCTTATCATCACGGTGAGGCAAGTTTAATGGGAGCAATAATTGGAATGGCACA 364744 | |||||||||||||| || | || | | ||| | ||||| || Sbjct 4872 ACATAGTGCTTATCATCACGGAGAATCTTCACTACAAAGTACTATAGTAAATATGGCTCA 4931 Query 364745 AAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGGAAGTCG 364804 ||| ||||||||||| |||||| |||||||| |||||||| || |||||||| ||| | Sbjct 4932 AAACTTTGTTGGAAGCAATAATCTAAATTTATTAGAACCATGTGGTCAATTTGGTAGTAG 4991 Query 364805 AGTAATGGGAGGTAAAGATTCTGCCAG---CCCACGTTATATTTGGACCAAACTTGAAAA 364861 || || |||| | | ||| || | |||||||| | || ||||| || Sbjct 4992 ---AAAGGAAGGTGGAAAGGATGCAAGTGCTGCTCGTTATATATTTACTAAACTATCTAA 5048 Query 364862 AGTGGCAGGATTAATATTTAGAAAAGAAGATAATCCAATTTTAAATTATATTAATGATGA 364921 | | | ||| |||||| | ||| ||| |||| | |||| ||| | ||||||| Sbjct 5049 ATGGACTAGATATATATTTCCAGAAGCTGATGATCCTTTATTAACTTACTTATATGATGA 5108 Query 364922 TGGATTAATGGTTGAACCTGAATTTTATCTTCCTATTATTCCTATGATTTTAGTAAATGG 364981 |||| | | |||| ||| | |||| |||| || ||||| |||||| |||| ||||| Sbjct 5109 TGGACAACAGATTGAGCCTTTGTATTATGTTCCAATCATTCCAATGATTCTAGTTAATGG 5168 Score = 118 bits (130), Expect = 4e-21 Identities = 390/592 (66%), Gaps = 32/592 (5%) Strand=Plus/Plus Query 363743 AGGAATTCCTAAACTAGAAGATGCTAATAAAGCAGGAACAAAAGATGCTCATAAATGTGG 363802 |||||| || ||| |||| ||||| ||| ||||||| | | || | |||||| Sbjct 3945 AGGAATCCCAAAATTAGAGGATGCAAATGAAGCAGGCGGACCTCACTCTAAGAAATGTAC 4004 Query 363803 ATTA-TATTTAGCAGAGGGAGATTCTGCTCT---TTCTATGATTCTGTCAGGGTTATCAA 363858 || || ||| | || ||||||||||| |||| || || | |||| | |||| Sbjct 4005 TCTAATACTTA-CTGAAGGAGATTCTGCAAAAACTTCT-TGTTT--GGCAGGACTTTCAA 4060 Query 363859 GTAAAGATAGAAATTTTTATGGTGCCTTTCCGTTAAAAGGAAAATTATTAAATGTAAGAG 363918 | || |||| | | || ||||| ||||| || |||||| | |||||||| |||| Sbjct 4061 TTGTAGGTAGAGACTATTTTGGTGTATTTCCACTACGTGGAAAACTTTTAAATGTTAGAG 4120 Query 363919 AAGCATCAGTTAAACAAATTATGGGAAATGATGAGATATCAAACCTTaaaaaaaTTTTAG 363978 |||| ||| |||||||| || || |||| ||| ||| ||| || ||||| || | Sbjct 4121 AAGCTTCATTTAAACAACAAATTGGTAATGTTGAAATACAAAATATTCTTAAAATATTGG 4180 Query 363979 GATTACGTAATGAATTTAAATATGAAATGGATGAAGAATTTAATACTTTAAGATATGGAA 364038 ||||| ||| || | || ||||| | ||| | | |||| ||||| |||||| Sbjct 4181 GATTAGGTATTGGACAAAAGTATGATA---ATGGACCAGTTAAC---TTAAGGTATGGAT 4234 Query 364039 AAGTAATAATTTTATGTGATTCAGATGTAGATGGAAGTCATATTAAGGGACTAATTTTAA 364098 |||| | | ||| |||| ||||| ||||||||||| || ||||| | | Sbjct 4235 CTTTAATGCTAATGACAGATCAAGATCATGATGGGAGTCATATTAAAGGGCTAATAATTA 4294 Query 364099 ATATGTTTCATAGTATGTGGCCTAATCTT--TTAAAAAGAGAAGGTTTTATTACAACTA- 364155 | || | ||| | ||||| || ||| || | || ||||||| ||| ||| | Sbjct 4295 ACTTGATACATTATTACTGGCC-AAGCTTAATTCACTTTAG-AGGTTTT-TTAAAACAAT 4351 Query 364156 TGAACACTCCAATTGTTAAAGCAACAAAAGG---AAAAGAAATATTAAAATTTTATAATT 364212 | |||||||||||||| || | ||||| ||| ||||| | ||| | || | Sbjct 4352 TTGTTACTCCAATTGTTAAGGCGAAGAAAGGGCAAAACGAAATTT---CATTCTTTACTC 4408 Query 364213 TAACTGATTATGATAATTGGAGAAATGATAATAATACAAAA------GGATATTATATTA 364266 | ||| ||||| | |||||||| ||||| ||||| |||| | | | Sbjct 4409 TGTATGAATATGAACAATGGAGAAAGAATAATTCATCAAAATTAACTGGATGGAAGTTCA 4468 Query 364267 AATATTACAAAGGATTAGGAACATCTGATTCTAAAGAAGCTAAAGAATATTT 364318 |||| || ||||| ||||| || ||| | | ||| |||||||||||| Sbjct 4469 AATACTATAAAGGTTTAGGTACTTCTACTGATCTTGAATTTAAAGAATATTT 4520 >seq7 Length=503753 Score = 122 bits (134), Expect = 3e-22 Identities = 202/287 (70%), Gaps = 15/287 (5%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || ||||| || ||||| || |||||| | ||||| ||||||||||| || | Sbjct 272780 ATGCCGTTATCACTGTACCAGCTTACTTTAATGATTCTCAACGACAAGCAACTAAGGACG 272721 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || ||| || || ||||||||| | || ||||| || || |||||||| || Sbjct 272720 CTGGCTCTATAGCAGGCTTAAATGTTACAAGGATCATTAACGAGCCAACAGCAGCAGCCT 272661 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAG--aaaaaaaTATTTTAGTATTTGA 451497 ||||||||||| | ||| | || | || | || | |||| | || | ||| Sbjct 272660 TAGCATATGGAAT-GGAGA--------AAGCTGATGGCAAGACAATAGCT--GTTTATGA 272612 Query 451498 TTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCA-ATTGAAGATGGGGTATTTGAAG 451556 || || ||||| || ||| | |||| | ||| | ||| || || || ||||||| Sbjct 272611 CTTGGGAGGAGGTACCTTTGACATTTCTAT-CTTAGAGATTCTAGGGGGAGTTTTTGAAG 272553 Query 451557 TAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 | |||||||| ||||| ||||| || |||||||| ||| ||||| Sbjct 272552 TGAAGGCAACAAATGGAAATACTTCACTCGGAGGTGAGGATTTTGAT 272506 >seq24 Length=154580 Score = 116 bits (128), Expect = 1e-20 Identities = 194/278 (70%), Gaps = 7/278 (3%) Strand=Plus/Minus Query 96026 GAATAATTAGTTTTAAATTGATATGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGG 96085 ||||||| | |||| || || |||||| | ||| || | ||||||| ||| | || Sbjct 4543 GAATAATCATTTTTGTATAGAGATGCAACTAGTGCATCTTGAGGATCGTTAGGTTCAGGA 4484 Query 96086 TCAGCCAATAAACTGCAT--AAGGATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCC 96143 || | ||| ||| | | ||| | | ||| | |||| | ||||| || |||| Sbjct 4483 GAAGAGAGTAA--TGCTTGGATGGAAAGCATTACGGTTCTAAGAGTCAATGCAGGACTCC 4426 Query 96144 AGTTATTTTTTAAAATATCTAAACAAATTGCACCTGT---AGTACTAATATTTGGATGAT 96200 || || |||||||||||||| ||||| || || || | || ||| |||||||| Sbjct 4425 AGGCATCTTTTAAAATATCTAGGCAAATAGCTCCAGTTTGACTAGAAATGTTTGGATGCC 4366 Query 96201 AAATAGGAGTTTTAAATATAATTTTAGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAA 96260 |||| || ||||| | | ||| || || | ||||||||| |||| |||| | | | Sbjct 4365 AAATTTTTGTAATAAATTTGACTTTTGGGGGTTCATATGGATATTCTTTTGGAACAATTA 4306 Query 96261 TTTCTAATTGGAATACTCCACCCTCATAGGGTGTTCCT 96298 | || | ||| |||||||| |||||||| ||||||||| Sbjct 4305 TATCGAGTTGAAATACTCCCCCCTCATATGGTGTTCCT 4268 >seq26 Length=437080 Score = 113 bits (124), Expect = 2e-19 Identities = 243/354 (69%), Gaps = 17/354 (5%) Strand=Plus/Minus Query 412289 TTCCAAAACGACCACTTCTACCAATTCTATGTATAAAAGTTTCATGATTTTTAGGTAAAT 412348 ||||||| | ||| ||||| ||||||||||| ||| | ||| | ||| |||||| | Sbjct 211804 TTCCAAATCTACCGCTTCTTCCAATTCTATGAATATATAATTCTTTATTAGTAGGTAGGT 211745 Query 412349 CATAATTTATAACTAATTTAACCTCAGGAATATCTATCCCCCGTGCTAATAAATCAGTTG 412408 | ||||| | || || ||||| | | | ||| ||||| | | | ||||||| |||| Sbjct 211744 CGTAATTAACGACCAAATTAACTTGTTGCACATCAATCCCTCTTCCCCATAAATCTGTTG 211685 Query 412409 TTAATAAAATTCGTGTTTTTCCCTCTCTAAATTCATCTACAATTTTACTTCTTTCTT--C 412466 ||| ||||| || |||||||| ||||||||||| ||| ||| || ||||| | | Sbjct 211684 TTATTAAAACCCGAGTTTTTCCTTCTCTAAATTC-TCT-CAAGATTTCTTCTCTAGTAAT 211627 Query 412467 TTGTTCTAAACCTCCATG---AATTGTTGTAGTTGGAAATCCTTCCTCTTCTAACTTATT 412523 |||| | ||||||| || | | || ||||| ||| | || ||| || Sbjct 211626 TTGTGGAAGTTCTCCATGCACAAAAGATACCGT--GAAATGATTCTCCATCATTCTT-TT 211570 Query 412524 TTTAACAAATTCTATTTTATTAATTGAATTACAAAAAATCATTGTATGAG--ATGTTGAA 412581 ||| |||||| |||||| ||| ||||||||||| || | |||| | | || Sbjct 211569 ACTAAGCCATTCTACTTTATTCCTTGTGTTACAAAAAATAATAGATTGAGTAACAGTCAA 211510 Query 412582 ATTATTTGGTATAAATCTAATAAAGTATCAAATTT---ATATTCTTCTTCTACT 412632 | || | |||||||| ||||||| |||||||| | ||| || |||||| Sbjct 211509 AGTA--TCATATAAATCGCATAAAGTTTCAAATTTCCACTTTTCCTCCTCTACT 211458 >seq1 Length=1292604 Score = 98.7 bits (108), Expect = 4e-15 Identities = 149/209 (71%), Gaps = 10/209 (5%) Strand=Plus/Plus Query 502394 AATGCCAACAGCATCTACATCTCAACTATTAGGCAATTATGAATCATTTGAACCATTTAC 502453 |||||| || || ||||| || ||| ||||||| || | ||| |||||||||||||| Sbjct 443651 AATGCCTACTGCGTCTACCTCGCAAATATTAGGTAACAACGAAAGTTTTGAACCATTTAC 443710 Query 502454 TTCTAATATATATACTAGAA--GAACTTTAGCAGGTGAATTTATAGTTGTTAATAAACAT 502511 ||| ||||||||| | | | | ||||| | ||||||||| | || || ||| ||| Sbjct 443711 TTCAAATATATATCATCGTAGGGTACTTT--CTGGTGAATTTTTTGTAGTGAATCCTCAT 443768 Query 502512 TTAATAAATGATTTGAATGAAATCGGTGAATGGACTAATGAAA---TTAGACAAAAAGTA 502568 ||| | ||||| ||| |||| | || |||| |||| | ||| |||||| | Sbjct 443769 TTACTCAATGACTTGCTTGAACTTGGGCTATGG---GATGACAGGCTTAAACAAAATATC 443825 Query 502569 ATTAATGATAATGGTTCTATTCAAAATAT 502597 ||| ||||||| |||||||||||| Sbjct 443826 ATTGCAAATAATGGAAGTATTCAAAATAT 443854 >seq27 Length=671387 Score = 95.1 bits (104), Expect = 5e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 393021 GACTAGAATGGAATGATTATTTTATATCAATTGCTATTTTAACATCTTTAAGATCAACCT 393080 ||| | | ||| |||| |||||||| |||||| | || ||||| |||||| | | Sbjct 276757 GACCAAACTGGGATGAATATTTTATGAAAATTGCCAAAATAGCATCTCAAAGATCTAATT 276816 Query 393081 CTATTaaaaaaaaaGTAGGATGTGTTATTGTTAAAAATAAAAGAATTATTGCTACAGGAT 393140 ||||| || |||||| |||| || |||||||||||||||| ||||||| |||||| | Sbjct 276817 GTATTACAAGAAAAGTCGGATCAGTAATTGTTAAAAATAAAAAAATTATTAGTACAGGGT 276876 Query 393141 ATAATGG 393147 | ||||| Sbjct 276877 ACAATGG 276883 >seq9 Length=863262 Score = 95.1 bits (104), Expect = 5e-14 Identities = 166/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 437615 GTGTCGTATAATTGGCTTAACACTTGAAACACGACCTGATTTTATTACTCCGAAAGAAAT 437674 |||| | ||||| || |||||| | |||||| |||| |||| || || | | ||||| Sbjct 540108 GTGTAGAATAATAGGGTTAACATTAGAAACAAGACCGGATTACATCACACTAGACGAAAT 540049 Query 437675 --TACAATTCTTCGAAGTTATGGATGTACCAGAGTACAACTTGGAATTCAACATATCAAT 437732 | | ||| ||| || |||||||| ||||| || |||||||||||||||| || Sbjct 540048 ACTCCGATTAAGAGAATTT--GGATGTACTAGAGTCCAGCTTGGAATTCAACATACTGAT 539991 Query 437733 GATGATATTTTGAATTACATTAATCGAGGGTG-TAAACACAGTAAGTCAGTGAGAGCAAT 437791 || |||| || ||||||| |||| || || | || | || | | |||| Sbjct 539990 TATTGGGTTTTAAAACTCATTAATAGAGGTTGCTATTTGCGACAAAT-TGTTAAATCAAT 539932 Query 437792 CAAACTACTTAAAAATGCTGGTTTTAAGGTGGATATTCATTTGATGCCAGATTTGCC 437848 | | |||||||| || | || | ||| || |||||||| || ||||||||||| || Sbjct 539931 TAGATTACTTAAAGATACAGGGTATAAAGTTGATATTCACTTAATGCCAGATTTACC 539875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975717716524916