Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq18 194 4e-44 seq25 161 2e-34 >seq18 Length=776017 Score = 194 bits (214), Expect = 4e-44 Identities = 176/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||||||| || | || | ||||||||||||||| ||||||||||| | |||||| Sbjct 281765 TCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGT 281706 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| ||||||||||| | |||||||| || || ||||| || Sbjct 281705 TCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCC 281646 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || |||||||| ||| ||| ||||||||||| |||||||| ||| ||||| | Sbjct 281645 CTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACTTCTAA 281586 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||||||||| ||||| || || | ||||| Sbjct 281585 AGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281544 Score = 179 bits (198), Expect = 8e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| || || | || | ||||||||||||||||||||||||||| | |||||| Sbjct 281537 TCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCAGAAAGAGT 281478 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| ||||||||||| | |||||||| || || ||||| || Sbjct 281477 TCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCC 281418 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || |||||||| ||| ||| || || ||||| |||||||| ||| || || | Sbjct 281417 CTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAA 281358 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| ||||| ||||| || || | ||||| Sbjct 281357 AGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 281316 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| || || | || | ||||||||| ||||||||||||||||| | ||||| Sbjct 281309 TCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGT 281250 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | ||||| ||||| ||||| | || ||||| || || ||||| || Sbjct 281249 TCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCC 281190 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||||||| ||| ||| || || ||||| |||||||| ||| ||||| | Sbjct 281189 TTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAA 281130 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||||||||| || || || | ||||| Sbjct 281129 AGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 281088 >seq25 Length=676938 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||||||| || | ||| | ||| ||||| ||||||||||||||||| | ||||| Sbjct 542012 TCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGT 542071 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || ||||| | || || || || ||||| || || ||||| || || || || || Sbjct 542072 CCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACC 542131 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||||||| ||| || || |||||||| ||||| ||| ||| ||||| | Sbjct 542132 TTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAA 542191 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || ||||||||||| || | ||||| Sbjct 542192 TGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 542233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481216188709