Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 352 3e-92 >seq1 Length=1292604 Score = 352 bits (390), Expect = 3e-92 Identities = 1194/1859 (64%), Gaps = 26/1859 (1%) Strand=Plus/Minus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 |||| || |||||| || ||||| ||||| ||| |||| |||||||||||||| Sbjct 444070 GTTCTTAGATAATAAATGCCAGTTTTTAATCCTTTTTTCCAGCCATAGAAATGCATCGAT 444011 Query 47073 GTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATA 47132 | ||| || | | | ||| | | ||||||||||| | ||| ||| ||| |||| Sbjct 444010 GATAACTTTGCAAAGTTAGCATTTTCCATATGAATATTTAAAGACTGAGACTGGCAAATA 443951 Query 47133 AATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTT 47192 ||| || ||||| || |||||||| | | | |||| |||||||| |||||| Sbjct 443950 TATGGGCCCCTATCTGCAGCCATATCGATTACTGTCTTTTGCTTAATCTCCCAAACTGTT 443891 Query 47193 TTATAAATTTGTTTAATGTCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttt 47249 ||||||| || | ||| || |||| || ||||||||||| ||| ||| Sbjct 443890 TTATAAAGTTCGCGGACGTCCTCCGGGATTGTAAGAATATTTTGAATACTTCCATTATTT 443831 Query 47250 tctataattttgttttttaattcatttga--ccaaagttttcgttcagttaatgttttta 47307 | || || || || ||||| | | | | ||| || ||||| || || | Sbjct 443830 GCAATGATATT-TTGTTTAAGCC-TGTCATCCCATAGCCCAAGTTCAAGCAAGTCATTGA 443773 Query 47308 aAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTAC 47367 | ||||||||| || | |||||| ||||| ||||| ||||| ||||||||| Sbjct 443772 GTAAATGAGGATTCACTACAAAAAATTCACCAGAAAGTACCCTACGATGATATATATTTG 443713 Query 47368 TTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCA 47427 ||| ||||||| | | ||| || || || || ||||| | || || || ||||||| Sbjct 443712 AAGTAAATGGTTCAAAACTTTCGTTGTTACCTAATATTTGCGAGGTAGACGCAGTAGGCA 443653 Query 47428 TGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTT 47487 | | |||| || | ||| | | ||||| || ||| | Sbjct 443652 TTGGAGCAATTAGAAGTGAATTACGGAGCCCATACTTAGAAATCCTTTCTTTAAGTGAAT 443593 Query 47488 TCCAATCCCAAAGATCTGAT---GGAACAACATTCCAAAAATCATATTGAAGAATTCCTT 47544 ||| || ||||| | || || ||| ||| | ||| |||| ||||| |||| Sbjct 443592 CCCAGTCGCAAAGCCCAGAATCAGGCTTAACTCCCCACATGTCAAATTGTAGAATACCTT 443533 Query 47545 TACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAAC 47604 |||| || || ||| ||| |||| ||| || || | | || ||||| || |||| Sbjct 443532 TACTCGCGGGTGACCCAGAATACGTTTCATACGGCCCATCTTTTTCTGCGAGCTCGCAAC 443473 Query 47605 TTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGC-T 47663 | || || | || |||||| || |||||| || | | |||| ||||| || | Sbjct 443472 TAGCCTCGAGCGCCGCATAATAAATAACTTCAAAAATCTCCTTATTTAATTTCCTAGCCT 443413 Query 47664 TCTGATGATTCAAAAGG-ATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACC 47722 ||| ||||||| | || ||| || |||||| | |||||||||||| Sbjct 443412 TCTC-TGATTCATATGGCATACGAAGCATCATA-AAGCAATCTGCAAGTCCTTGAACACC 443355 Query 47723 AATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTT 47782 ||| |||| || | ||| || ||| || | | |||||| | | ||| | Sbjct 443354 AATTCCAAGCGGGCGATGTTTTAGATTTGAGTTTTTACATTCTGGGAGAGAATAATATCC 443295 Query 47783 TATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATT 47842 ||| | |||||| |||| | || ||| |||| |||| Sbjct 443294 GTGATCAACAATTTTGTTTAAATTCCTCGTAATAACTCTCGTAACTTCCTTTAACTTATC 443235 Query 47843 AAAATCAAAC---TTGTTATTTAT---AACAAACCTATTAAGTGCTATAGATGCTAGATT 47896 ||| || || ||||||| | | ||||||| | ||| | || || || || || Sbjct 443234 AAAGTCGAATGTTTTGTTATCTTTGTCAACAAACTTCGGAAGACCAATGGACGCCAGGTT 443175 Query 47897 ACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACA 47956 ||| ||||| | ||||||| |||| || | ||| ||||| | |||| ||||| | Sbjct 443174 ACAAACAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGGTGCATAAATTACTGGA 443115 Query 47957 TTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCAT 48016 ||||| |||||||||| || ||| | | || ||||||||||| || Sbjct 443114 AACAATAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAGCGTCCTTGTAGCAGAT 443055 Query 48017 AAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTT 48076 ||||| ||||| ||||| || |||| || | ||| | ||||| || ||||| Sbjct 443054 GAAAGGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACCAAAGTTTCTGCGCCTT 442995 Query 48077 TATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC 48136 ||| ||| | | | |||||| | ||||| |||| ||| ||||| Sbjct 442994 CATAGTTTTTCTTCCGCGGCCCTGCTTTTCGTACTCTTCATATAGTTTCTTAAACTCATC 442935 Query 48137 CCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 || | |||| | ||||| ||||||| |||||||| | | |||||| | || Sbjct 442934 ACCCCAAACATCTTGCAACCCCCTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTC 442875 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGT 48256 || | || || |||||||| ||| || | |||||| || ||| | || | Sbjct 442874 TTTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCA 442815 Query 48257 TCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATG 48316 ||| | || || || ||| |||| || | | ||||| ||| |||| | ||| |||| Sbjct 442814 TCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACTCCACAACATCTACATG 442755 Query 48317 CCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||| || || ||||| ||||| || |||| ||||| || ||||| || ||||| Sbjct 442754 CCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATA 442695 Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 ||| ||||||| |||||||| | ||||||||| | | ||||| || | |||||||| Sbjct 442694 TCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGT 442635 Query 48437 TCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC 48496 ||| |||||| || | |||| |||||||| | || | || | ||| || || Sbjct 442634 ACCCCGAATATACGAGCCCGTTCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGC 442575 Query 48497 CATTTTAG--ATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCA 48554 | ||| ||||| | |||| | | || || ||| |||| || |||||| ||| Sbjct 442574 AGTCTTACTAATATTTG--CACATTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCC 442517 Query 48555 TCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAAT 48614 ||| || | | || ||||||| |||||||| || ||| || || || || Sbjct 442516 TCTGGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAA 442457 Query 48615 AATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACA 48674 | || || | ||||| |||| | || | ||||| |||||||||||||| | || Sbjct 442456 AGCGTAGGTGTAGCATGGGTAAAATACTTTTGCGATAATAATTTATATGTTTCGAGTGCA 442397 Query 48675 GAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTT 48734 | || ||||| | ||||||||| ||| || | ||||| | || ||| ||||| Sbjct 442396 GCCTCGATATCACCGCAATGTATACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTC 442337 Query 48735 TCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAA 48794 || ||||| ||||||| ||| | | |||||| || |||| || ||||| || ||||| Sbjct 442336 TCTACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAA 442277 Query 48795 TAGTTGTATGAAAAGTCGTTATCATTAAT-AATTGATGAATTTATTCTTTCCTTATGTT 48852 || | ||| ||| || || | | | | |||| |||||| ||| |||| |||| || Sbjct 442276 TAATCATATTCAAAATC-TTTTGAGAAGTCAATTTTTGAATTAATTATTTCTTTATTTT 442219 Score = 262 bits (290), Expect = 4e-65 Identities = 590/863 (68%), Gaps = 35/863 (4%) Strand=Plus/Plus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||| | ||||| |||||||||||||| ||||| || | | ||| ||| | Sbjct 164361 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 164420 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA-ATCCTAATTCTAATAGT 18789 |||| |||| || ||||| ||||| || ||||| || |||| | | || || Sbjct 164421 CCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATCC-AGAGCAAAAAGG 164479 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATA--TC-ACAATTCATTCCTATT 18846 |||||||| |||||||||| ||||||| || | |||| || | | |||||||| || Sbjct 164480 AGTCTATCAGCTACAAATTCAATATAT-TGAGC--CATAAGTCTAGAGTTCATTCCAATA 164536 Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906 | | |||||| |||| || |||||| | | ||||| || || || ||||| ||| Sbjct 164537 AGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATA 164596 Query 18907 ATAGATACAACTCTATCTTCATTAGGAGGGTATA--GAAGATGTTTAAACATCAAACATG 18964 || | |||||| || | || |||| |||| ||| | || || || | Sbjct 164597 ATTTGTTGTACTCTA--GAAGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCAAG 164654 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 |||| ||| ||||| ||| || || | || || | ||||||||| ||||| | |||| Sbjct 164655 CAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAG 164714 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATA 19083 |||| ||||| | ||||| | ||| ||||||| | |||| | | |||||||| | || Sbjct 164715 GCATAAGTCCACGCTTTTTAAGCCAAAATATAGCA-CAAAAGCTACCAGAAAAAAGAATT 164773 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATT-ATTATGAAT 19142 |||||||| || || || | | || | | |||| || | ||| || ||||| || Sbjct 164774 CCTTCTACAGC-ACAGAATCCAATAAT-TCTCTCAGCAA--AAGATCTTTCATTATTCAT 164829 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 |||||| |||||| || || |||||||| || | || |||| | ||| Sbjct 164830 CCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAAA 164889 Query 19203 TAGATACAT---ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || ||| ||| || | | | || ||| |||| || || || || || | Sbjct 164890 AAG---CATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAATATGT 164946 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 ||| |||||| | || |||||||| |||||| | ||| | ||||||||||| || Sbjct 164947 TTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGAT 165006 Query 19320 CTGTACTTCAC-TACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 |||| ||| | || |||| | | |||| ||||| |||| || ||||||||||| | Sbjct 165007 ATGTATTTCTCTTAGGAAAT-TGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAG 165065 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA---TCTGAGGTTAA-TGTATTC 19434 |||| || |||| || | ||||||||||||| | ||| ||| |||| | | | Sbjct 165066 CAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCT----TTAAGACTTTCC 165121 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCT 19494 ||||| || |||||| | ||| || | |||||| |||||| || || |||||| Sbjct 165122 CAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCT 165181 Query 19495 TTTTTATACATGTTCCATATATC 19517 ||||||||||| ||| ||||| Sbjct 165182 TTTTTATACATAAACCAAATATC 165204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108610288280