Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq25 154 1e-32 seq18 125 5e-24 >seq25 Length=676938 Score = 154 bits (170), Expect = 1e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || ||||| | ||| ||||| || | || ||| ||||||||||||||||||||| Sbjct 542007 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 542066 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | | | |||| ||||| || || || ||||| ||||| ||||||||||| | || Sbjct 542067 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 542126 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||||||| ||||||| | | || ||||| | || || Sbjct 542127 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACT 542186 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTACGT 48777 |||| || || || || || || |||||||||||||||||||||||| | | ||||| Sbjct 542187 TCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTTCTCTACGT 542244 >seq18 Length=776017 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||||| ||| |||||||||||||||||||||||| ||| ||| | || Sbjct 281527 AAGACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCATCT 281468 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || ||||| || || || || | || |||||||| | |||| |||||||| || Sbjct 281467 TCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATCT 281408 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||||||| |||||| | | | || || | || ||||| | || || || Sbjct 281407 TGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAAAGTGATTGTC 281348 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||||| ||||| |||||||||||||| Sbjct 281347 TTTCCCGTCAATGTTTTGACAAAAATCTGCAT 281316 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||| | ||| ||| |||||||||||||||||||| ||| ||| | || Sbjct 281299 AAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCC 281240 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || ||||| || ||||| || | ||||||||||| | |||| || ||||| || Sbjct 281239 TCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCT 281180 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||||||| |||||| | | | || || | || || |||| || || || Sbjct 281179 TGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGTC 281120 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| |||||||| || |||||||||||||| Sbjct 281119 TTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 281088 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || | ||| |||||||||| ||| ||||||||| |||||||||||||| Sbjct 281770 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAA 281711 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || || || ||||| || || || || | || |||||||| | ||| Sbjct 281710 AGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGA 281651 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||| || ||||||| || || | | | || || | || || Sbjct 281650 ATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACT 281591 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| ||||| ||||| |||||||||||||| Sbjct 281590 TCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937474647721