Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq25 131 1e-25 >seq25 Length=676938 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || ||||| || ||||||||||| ||||| || || ||||| || ||| |||||| Sbjct 542236 AAGATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCT 542177 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||||| || | | || | || ||||| | || |||||||| || | || || Sbjct 542176 TCAGACACTATTGAGAATGTAAAAGCAAAGATTCAA-GACAAAGAAGGTATCCCACCTGA 542118 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||||| | || |||||||| || |||||||||||||| || ||| | | ||||| Sbjct 542117 TCAACAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTA 542058 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || |||||||| || |||||| ||||| ||||||| ||| || |||| || Sbjct 542057 CAATATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGACTAAGAGGTGG 542007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404660015233