Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1 123 1e-23 >seq1 Length=1292604 Score = 123 bits (136), Expect = 1e-23 Identities = 297/446 (67%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 25918 TTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGC 25977 || |||||| |||||||||||| ||| |||| ||| | ||| ||| | || | Sbjct 442874 TTTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCA 442815 Query 25978 TCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTG 26037 |||||| || |||||||| ||||||||| ||| || | || || | || |||| || Sbjct 442814 TCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACTCCACAACATCTACATG 442755 Query 26038 CCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTA 26097 ||| || || ||||| || |||| ||| || | ||| ||||||||||| || | || Sbjct 442754 CCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATA 442695 Query 26098 TCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 ||| ||||| ||||| |||| |||||||||| | |||| | || ||| || || Sbjct 442694 TCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGT 442635 Query 26158 GCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCA-TG-AATACCGATTCCACCA 26215 | |||| | || || || |||||||| | || || | || | || || Sbjct 442634 ACCCCGAATATACGAGCCCGTTCCTCTAATAT--TACTCACTGCCACTCCAAGACCGCCG 442577 Query 26216 GCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCA 26275 || || |||| |||||| | || | || || ||||| || | ||| ||| Sbjct 442576 GCAGTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCC 442517 Query 26276 CCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAAT 26335 || |||| | |||||||||||| || | ||| | | || || || || || Sbjct 442516 TCTGGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAA 442457 Query 26336 AATGTCGGTGTAGCATGAGTATAATA 26361 | || ||||||||||| ||| |||| Sbjct 442456 AGCGTAGGTGTAGCATGGGTAAAATA 442431 Score = 86.0 bits (94), Expect = 3e-12 Identities = 122/170 (72%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 25012 AATAAATTCTCCAGACAAAACTCTTC--TTATTGATAAGTTTGAAGTGAATGGTTCAAAA 25069 || |||||| ||||| | || || | | || ||| |||||||| |||||||||||| Sbjct 443753 AAAAAATTCACCAGAAAGTACCCTACGATGATATATA--TTTGAAGTAAATGGTTCAAAA 443696 Query 25070 CATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGC 25129 | ||| || || ||||| ||||| || ||||| || || |||||| || |||| || Sbjct 443695 CTTTCGTTGTTACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGT 443636 Query 25130 GAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 ||||| | | ||||| ||| |||| || ||| | | |||||| || Sbjct 443635 GAATTACGGAGCCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTC 443586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039916734025