Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq25 150 3e-31 seq18 140 6e-28 >seq25 Length=676938 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||| | || | ||||| ||||| |||| ||| || |||||| || || || Sbjct 542006 ACCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGA 542065 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || ||| || || ||||||||||| ||||| || | | |||||||||||| || Sbjct 542066 TAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGG 542125 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||| ||||| || || | ||||| ||| |||||| || |||| ||||| Sbjct 542126 GATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAAC 542185 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||| | || || || || || |||| ||||||||||| || ||||| || Sbjct 542186 TTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 542236 >seq18 Length=776017 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | || | || | |||||| || | ||| || |||||| || || Sbjct 281317 ATACCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCA 281258 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||||| ||| |||||||| || || ||||| ||||| | |||||||||||| Sbjct 281257 GAGAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGT 281198 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| || || | |||| |||| ||| || || || | ||| Sbjct 281197 GGAATTCCTTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 281138 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || || || ||||| | || || ||||| || ||||| Sbjct 281137 ACTTCCAAAGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 281088 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | || | || | ||| || || | |||||| |||||| || || Sbjct 281545 ATACCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCA 281486 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||||| ||| |||||||| || || || || ||||| | ||||||||||| Sbjct 281485 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 281426 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || |||||||| || || | |||| |||| ||| || || || | ||| Sbjct 281425 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 281366 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||| ||| || || || || || | ||||| ||||| || ||||| Sbjct 281365 ACCTCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 281316 Score = 127 bits (140), Expect = 4e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 |||| || |||||||| | || | ||||| ||| || || | |||||| ||||| | Sbjct 281778 TTTACATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGT 281719 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 | || || | ||||| ||| |||||||| || || || || ||||| | ||||||| Sbjct 281718 AATCAGAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGAT 281659 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 |||| || ||||| || |||||||| || || | || | || ||| || || || | Sbjct 281658 CAGGTGGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATG 281599 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||| ||| || || || ||||| | ||||| ||||| || ||||| Sbjct 281598 GTTCAACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654096366640