Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq25 181 2e-40 seq1 170 4e-37 seq18 167 5e-36 >seq25 Length=676938 Score = 181 bits (200), Expect = 2e-40 Identities = 187/242 (77%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATA 192357 ||| ||||| ||||||||| || | ||||| || || ||||||| ||| ||| || ||| Sbjct 541996 GTTCAATAACACCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGA-ATA 542054 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || |||||||||| || | | || ||||||||||| ||||||||||| | | |||| Sbjct 542055 TTGTAATCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGT 542114 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 ||||||||||| || |||||||| ||||| || || ||||||||| |||| ||| Sbjct 542115 TGATCAGGTGGGATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCT 542174 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | ||| ||||| | || ||||| || |||||||| ||||| | ||| |||||||| Sbjct 542175 GAAGGTTCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATC 542234 Query 192538 TT 192539 || Sbjct 542235 TT 542236 >seq1 Length=1292604 Score = 170 bits (188), Expect = 4e-37 Identities = 481/727 (66%), Gaps = 26/727 (4%) Strand=Plus/Plus Query 49652 TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTT 49711 |||||| ||||||||||||| |||||| | ||| | | | | ||||| || ||||| | Sbjct 164482 TCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCC-AATAAGAT 164540 Query 49712 AAATGGTAA-TGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatca 49770 || | || || ||| || ||| | | |||||| || ||||||| | || || Sbjct 164541 CAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAAT-- 164598 Query 49771 taattatattatttt--ttgataatttatatttaatatgattcgcatatattaaACATGC 49828 | || || | | ||| || ||||||||||| | | || | |||||||| || || Sbjct 164599 TTGTTGTACTCTAGAAGTTGGTAGTTTATATTTAAGA-GCTTTG--TATATTAAGCAAGC 164655 Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 ||| |||| |||||| || || || | |||| ||||||| || || | ||| || Sbjct 164656 AAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAGG 164715 Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 49948 ||| | ||| | |||||||||||||||||| | ||| |||| |||||| | || || Sbjct 164716 CATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAATTCC 164775 Query 49949 CTCGACA-CACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT-ATC 50006 || ||| ||| ||| | || ||||| | |||| || | |||| || | ||| Sbjct 164776 TTCTACAGCAC-AGAATCCAATAATTCTCTCAGCAAA---AGATCTTTCAT-TATTCATC 164830 Query 50007 CAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 50066 || || | ||||| |||||||| ||||| | | || |||| ||||| | || Sbjct 164831 CATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAA-- 164888 Query 50067 AATTCAttt--ttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTT 50124 || ||||| ||| | ||||| || ||||| ||| Sbjct 164889 AAAGCATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAATATGTTT 164948 Query 50125 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCT-GAATAC 50183 || ||| | || ||||| |||||||||| |||| | |||||||||| | ||| Sbjct 164949 CATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGATA- 165007 Query 50184 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 50243 || | ||| | ||| || | || || || |||||||||||| || || Sbjct 165008 TGTATTTCTCTTAGGAAATTGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAGCA 165067 Query 50244 AAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGAT 50303 ||||| |||| |||||||||||||||||| | ||| ||||| | | |||||||| | Sbjct 165068 AAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTCCCAATCT 165127 Query 50304 TCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTT 50361 | ||| |||| ||| || | ||||| | |||||| |||||| | | ||||| Sbjct 165128 CTAGTATC--TTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTTTT 165185 Query 50362 TATACAT 50368 ||||||| Sbjct 165186 TATACAT 165192 >seq18 Length=776017 Score = 167 bits (184), Expect = 5e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| || | ||| |||||||| ||||| | ||| ||| || ||||| ||||| Sbjct 281317 ATACCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGA-ATATTGTAATC 281259 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | |||| | |||| || ||||| || || ||||||||||| | |||||||||||| Sbjct 281258 AGAGAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGG 281199 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| |||||||| || || |||||||| || | || || | ||| Sbjct 281198 TGGAATTCCTTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTC 281139 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || || || || || || || |||| ||| |||||||| Sbjct 281138 AACTTCCAAAGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 281088 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | ||| |||||||||||||| | |||||| ||||| |||||| Sbjct 281545 ATACCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCA 281486 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || ||||| || || || |||||||| | |||||||||||| Sbjct 281485 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 281426 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || || |||||||| || | || || | ||| Sbjct 281425 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 281366 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||| || || || || || |||||||| | ||| |||||||| Sbjct 281365 ACCTCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 281316 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| | ||||| ||||||||||| | |||||| |||||| |||||| Sbjct 281773 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 281714 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || ||||| || || || |||||||| | |||||||||||| Sbjct 281713 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 281654 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || || || || || || | || || | ||| Sbjct 281653 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCA 281594 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| || || || || || |||||||| | ||| |||||||| Sbjct 281593 ACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479659431450