Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq25 174 3e-38 seq18 154 3e-32 seq1 123 5e-23 >seq25 Length=676938 Score = 174 bits (192), Expect = 3e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||| ||||||||| |||| ||||| || || ||||||| ||| || |||||| ||| Sbjct 542001 ATAACACCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAA 542060 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || |||| || | |||| ||||||||||| |||||||| || | | |||||| ||| Sbjct 542061 TCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCA 542120 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||| ||||| || || ||||||||| ||||| ||||| | | Sbjct 542121 GGTGGGATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGT 542180 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| | || ||||| || |||||||| ||||| | || |||||||| || Sbjct 542181 TCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 542236 >seq18 Length=776017 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| ||| |||||||| ||||| | ||| || |||||| ||||| Sbjct 281317 ATACCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCA 281258 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || ||||| || || ||||| ||||| | |||||| |||||| Sbjct 281257 GAGAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGT 281198 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || || |||||||| || || || || | ||| Sbjct 281197 GGAATTCCTTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 281138 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || || || || || || || |||| || |||||||| Sbjct 281137 ACTTCCAAAGTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 281088 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| ||| |||||||||||||| | |||||| |||||| ||||| Sbjct 281545 ATACCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCA 281486 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || ||||| || || || || ||||| | ||||| |||||| Sbjct 281485 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 281426 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || |||||||| || || |||||||| || || || || | ||| Sbjct 281425 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 281366 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||| || || || || || |||||||| | || |||||||| Sbjct 281365 ACCTCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 281316 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||||| ||||| ||||||||||| | |||||| ||||| ||||| Sbjct 281773 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 281714 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || ||||| || || || || ||||| | ||||| |||||| Sbjct 281713 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 281654 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || |||||||| || || || || || || || || || | ||| Sbjct 281653 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCA 281594 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| || || || || || |||||||| | || |||||||| Sbjct 281593 ACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281544 >seq1 Length=1292604 Score = 123 bits (136), Expect = 5e-23 Identities = 341/510 (67%), Gaps = 16/510 (3%) Strand=Plus/Plus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 |||| ||||| ||| | ||||| || || || ||||| |||| | ||| || | || Sbjct 164361 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 164420 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAAT 38951 ||| |||| || ||||| ||| ||| ||||| |||| | | || | | Sbjct 164421 CCATCCAATCGAAGGGATTAGAAACATTGTAA-ATTTTGGGGATATCCAGAGCAAAAAGG 164479 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011 | |||||| || |||||||||| |||||| ||| | | | | ||||| || ||||| Sbjct 164480 AGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCC-AATAAG 164538 Query 39012 TTAAATGGTAA-TGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | || | || || ||| || ||| | | |||||| || ||||||| | || || Sbjct 164539 ATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAAT 164598 Query 39071 cataattatattatttt--ttgataatttatatttaatatgattcgcatataGTAAACAT 39128 | || || | | ||| || ||||||||||| | | || | |||| ||| || Sbjct 164599 --TTGTTGTACTCTAGAAGTTGGTAGTTTATATTTAAGA-GCTTTGTATAT--TAAGCAA 164653 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 ||||| || | |||||| ||||| || | |||| ||||||| || || | ||| Sbjct 164654 GCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCA 164713 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 ||||| | ||| | |||||||||||||||||| | ||| |||| |||||| | || Sbjct 164714 GGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAATT 164773 Query 39249 CCCTCCACA-CACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307 || || ||| ||| ||| | || ||||| | |||| || | |||| || Sbjct 164774 CCTTCTACAGCAC-AGAATCCAATAATTCTCTCAGCAAA---AGATCTTTCATTATTCAT 164829 Query 39308 CCAATTTATGGCCCAATCTGCttttttttt 39337 ||| || | ||||| |||||||| ||||| Sbjct 164830 CCATTTAGTTGCCCATTCTGCTTTCTTTTT 164859 Score = 87.8 bits (96), Expect = 3e-12 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 39441 TCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGA-ATACTGAACTTCGGAAAA 39499 || ||||| |||||||||| |||| | |||||||||| ||| || | ||| | Sbjct 164963 TCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGATA-TGTATTTCTCTTAG 165021 Query 39500 GAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAAC 39559 ||| || | || || || |||||||||||| || || ||||| |||| || Sbjct 165022 GAAATTGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAGCAAAGAAAGCTAGGAC 165081 Query 39560 ATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGA 39619 ||||||||||||||| | ||| ||||| | | |||||||| | | ||| |||| Sbjct 165082 GTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTCCCAATCTCTAGTATC--TTGA 165139 Query 39620 --TAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATACAT 39670 ||| || | ||||| | |||||| |||||| | | |||||||||||| Sbjct 165140 CTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTTTTTATACAT 165192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135694516600