Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 147 6e-30 seq9 118 3e-21 seq4 89.7 2e-12 >seq1 Length=1292604 Score = 147 bits (162), Expect = 6e-30 Identities = 674/1049 (64%), Gaps = 40/1049 (4%) Strand=Plus/Minus Query 155489 ATCAATAATGTTATTTAAATTTGTAACCAATACCT-TGGTTACGTCTGCTAATTTCACAT 155547 ||||| ||| || |||||||| | |||| || | || || || ||| || || Sbjct 443291 ATCAACAATTTTGTTTAAATTCCTCGT-AATAACTCTCGTAACTTCCTTTAACTTATCAA 443233 Query 155548 AGTCAAATGTTTTATCCTCATTT---ACAAACATACCAAGACCAATAGACGCCAGATTAC 155604 |||| |||||||| | || || |||||| | ||||||||| |||||||| |||| Sbjct 443232 AGTCGAATGTTTTGTTATCTTTGTCAACAAACTTCGGAAGACCAATGGACGCCAGGTTAC 443173 Query 155605 ATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTA--GAACT 155662 | || ||| | || || || |||| |||| ||| || ||| | ||| | | Sbjct 443172 AAACAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGGTGCATAAATTACTGGAAA 443113 Query 155663 CTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAAT 155722 | || || || ||||| ||||||||| ||||| || ||| |||||||| || Sbjct 443112 CA--ATAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAGCGTCCTTGTAGCAGAT 443055 Query 155723 GTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATT 155782 | | || |||||||| || || || || | || || | ||| || | | || || Sbjct 443054 GAAAGGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACCAAAGTTTCTGCGCCTT 442995 Query 155783 AATT-TGCTTGTT----GTATCTGCCTTCCG-ACTCATATTTCATATACAGCGTTCGGTA 155836 || | || || | |||| || || |||| |||||||| ||| || Sbjct 442994 CATAGTTTTTCTTCCGCGGCCCTGCTTTTCGTACTC----TTCATATA----GTTTCTTA 442943 Query 155837 A--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAA 155894 | || ||||| || ||| || || ||| | ||| || || | || | |||| Sbjct 442942 AACTCATCACCCCAAACATCTTGCAACCCCCTGCATTCATCCGGACACATAAGAGTCCAA 442883 Query 155895 ATTT--TATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAA 155952 || | || | | || | ||||||||||| |||| |||||| ||| || | Sbjct 442882 TCTTGGTCTTTCTCA--ACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGA 442825 Query 155953 GGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCA 156011 |||| | || | | | |||||| | || |||||||| | || || | || ||| || Sbjct 442824 GGTCAC-GGCATCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACTCCACA 442766 Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC---TCTTGCCACCC 156068 | ||| ||| ||||||| ||| || |||| ||| || | || ||||| Sbjct 442765 ACATCTACATGCCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTCCACCT 442706 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 || || | ||| | |||||| | ||| | || | || ||| ||||| | ||||| || Sbjct 442705 TGGTCAATATATCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCATTAGAC 442646 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 | |||||||| || ||||||| ||| || | | | || |||| | | |||| Sbjct 442645 CTTCCATTGGTACCCCGAATATACGAGCCCGTTCCTCTAATATTACTCACTGCCACTCCA 442586 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 | ||| || | ||| ||| | || |||| ||| || | |||||||| || Sbjct 442585 AGACCGCCGGCAGTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAAAATACCATCT 442526 Query 156249 ATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCA 156308 |||||||| ||| ||| |||| | | || || | |||||||| ||| || || Sbjct 442525 ATAGAATCCTCTGGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGAGTGCCG 442466 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAA-TCGTATGT 156367 | |||||| || |||||||| ||||| |||||||||| | || | |||| | ||||| Sbjct 442465 GAGTTGAAAAGCGTAGGTGTAGCATGGGTAAAATACTTTTGCGATA-ATAATTTATATGT 442407 Query 156368 CTC--CTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATA 156425 || | | | ||| | || | | || |||| ||| || ||||| | | Sbjct 442406 TTCGAGTGCAGC--CTCGATATCACCGCAATGTATACCACAAGAAACTCTCATTAGAAGA 442349 Query 156426 TGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTT 156485 || || || | |||||||||| |||||||| ||||| || | | ||| | |||| Sbjct 442348 TGTTGTGGTCTCTCTACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTCTAAAGTT 442289 Query 156486 TTAAACCCGAAATAATCAAACAGAAAATC 156514 || || | ||||||||| | |||||| Sbjct 442288 TTGAATGCAAAATAATCATATTCAAAATC 442260 >seq9 Length=863262 Score = 118 bits (130), Expect = 3e-21 Identities = 345/524 (66%), Gaps = 23/524 (4%) Strand=Plus/Plus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 ||| |||||| || || | | |||||||| || ||||| | ||| | | || ||| Sbjct 743693 TCCGATCAAATCTTCCTGGCCTTGTTAATGCAGGATCTAAAACATCAGAACGATTAGTTC 743752 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| | | || |||||||| | ||| ||| Sbjct 743753 CTGCTAAAACTATTACTCCATTAT-TTTCCGTGAAGCCATCCATTTCAACAAGAATCTGA 743811 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCG--CTCCttt 289024 ||||| || |||||| |||||||| || |||| || | |||| ||||||| Sbjct 743812 TTAAGAGTACTTTCCCTCTCATCATTAGA------TGAAGCAGCA-AATCCACCTCCTTT 743864 Query 289025 --------ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTG 289076 || | ||||| ||||||||||| ||||| |||| | || ||||| | Sbjct 743865 AGCACGTTTTCTCCCAACTGCATCAATTTCATCAATAAAAACAATACTTGGAGATAACTT 743924 Query 289077 TCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTAC 289136 ||| || || ||||| ||||||||| | ||||| | |||||| | || || | Sbjct 743925 TCTTGCTTGTGAAAATAGTTCTCTTACTCTACTGGCTCCCATTCCAACAAAAATCTCAAT 743984 Query 289137 AAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGC 289196 ||| ||| | || | | || || | |||||| ||||| || || || ||| | || Sbjct 743985 AAAATCACTTCCAGAAATATAAAAAAAAGGTACATTAGCTTCACCAGCAACAGCCTTTGC 744044 Query 289197 CAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC 289256 || | ||| || || || || |||||||| | | |||| | || ||||||| |||||| Sbjct 744045 TAGTAATGTTTTGCCGGTACCTGGTGGTCCTACCAGTAGAGCACCTTTTGGTATTTTTGC 744104 Query 289257 CCCAGCAGA-CTTATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCA 289314 ||| ||| ||| | || | ||| || ||||| ||||| || | ||| | | ||| Sbjct 744105 ACCA--AGATCTTGAAATTTTTTGGGATCTTTTAAGAATTCCACCAATTCATATATTTCT 744162 Query 289315 TATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 | ||| || || | ||| || | |||| ||| ||| ||| Sbjct 744163 TGTTTGGCTTCTTTCATTCCAGCAATATCACTAAATTTAACATT 744206 >seq4 Length=889257 Score = 89.7 bits (98), Expect = 2e-12 Identities = 251/382 (66%), Gaps = 10/382 (3%) Strand=Plus/Minus Query 59990 CCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATAA 60049 || || || ||||| | || ||||| | |||||||| || || ||||| | |||||| Sbjct 5189 CCTGTTCCTATACCATCAGTACCATTAACTAGAATCATTGGAATGATTGGAACATAATAC 5130 Query 60050 ACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATTTCG 60109 | ||||||| | |||||||| | |||||| ||||| | || ||| ||| Sbjct 5129 AAAGGCTCAATCTGTTGTCCATCATCATATAAGTAAGTTAATAAAGGATCATCAGCTTCT 5070 Query 60110 GGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCTGCG 60169 ||||||||| | ||| || |||| || || || ||||| | | | ||| Sbjct 5069 GGAAATATATATCTAGTCCATTTAGATAGTTTAGTAAATATATAACGAGCAGCACTTGCA 5010 Query 60170 TCCTTGCCACC---CATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATG 60226 ||||| ||||| | | || | |||||||| || ||| | |||| ||| | Sbjct 5009 TCCTTTCCACCTTCCTTTCTAC---TACCAAATTGACCACATGGTTCTAATAAATTTAGA 4953 Query 60227 TTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTG--GCTT 60284 || || || || || |||||||| | | || |||| || ||| | || | || Sbjct 4952 TTATTGCTTCCAACAAAGTTTTGAGCCATATTTACTATAGTAC--TTTGTAGTGAAGATT 4895 Query 60285 CACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTT 60344 | ||||||||||| || |||||| | |||||| ||| |||||| | || |||| || Sbjct 4894 CTCCGTGATGATAAGCACTATGTTCAGCAACATAACCAGCTAATTGTACAACCTTAAGTT 4835 Query 60345 CGGAGTGGAGTTTTTTCTTGAA 60366 | | ||||| ||||| || Sbjct 4834 CATTATTAAGTTTCTTCTTAAA 4813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817090843099