Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq25 125 6e-24 seq18 105 5e-18 >seq25 Length=676938 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || | || || || |||||||| || ||||| | | || | | || || Sbjct 542025 ACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTCTTCC 542084 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| |||||| | |||| | || ||||| || || ||||| ||||||||||| Sbjct 542085 AATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTCTTG- 542143 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| ||| ||| | || | |||||| ||| |||| ||||| | || || || || Sbjct 542144 AATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGTCTT 542203 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| ||||| ||||| |||||||| || Sbjct 542204 CCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 542236 >seq18 Length=776017 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| | ||||| ||||||||||| || ||||| | || || | ||| || Sbjct 281524 ACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCATCTTCT 281465 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||| || || || | || || | ||| ||||| || ||||| ||||| || ||||| Sbjct 281464 AATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATCTTG- 281406 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| || ||| |||| | ||||| || |||| || || | ||| || || || Sbjct 281405 AATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAAAGTGATTGTCTT 281346 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| ||||| |||||||| Sbjct 281345 TCCCGTCAATGTTTTGACAAAAATCTGCAT 281316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219073238807