Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq4 111 2e-19 >seq4 Length=889257 Score = 111 bits (122), Expect = 2e-19 Identities = 245/362 (68%), Gaps = 24/362 (7%) Strand=Plus/Plus Query 162999 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAAC 163058 ||||||||| |||||| ||| |||||||| ||||| | | ||| | ||||| ||| Sbjct 4838 TTAAGGTTGTACAATTAGCTGGTTATGTTGCTGAACATAGTGCTTATCATCACGGAGAAT 4897 Query 163059 AAAATTTATGTGAAA---CTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATA 163115 || | ||| ||||| | || | || ||| | |||||||| | |||||| Sbjct 4898 C---TTCACTACAAAGTACTATAGTAAATATGGCTCAAAACTTTGTTGGAAGCAATAATC 4954 Query 163116 TAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTC-- 163173 || ||| | ||||| |||||||||||||| ||| ||||| || || ||| | Sbjct 4955 TAAATTTATTAGAACCATGTGGTCAATTTGGTAGTAGAAAGGAAGGTGGAAAGGATGCAA 5014 Query 163174 -TGCGGCATCAAGATATATTTATACCAAACCAAATAAAATATTAAAATATATATTTAGAG 163232 ||| || || | ||||| | ||| |||| | |||| | |||||||||| || Sbjct 5015 GTGCTGC-TC--GTTATATATTTACTAAACTATCTAAATGGACTAGATATATATTTCCAG 5071 Query 163233 AAGAAGATGACCCTATTTTAAATTA--TA-CTGTTGAGGG---------TGAACCTGTTC 163280 ||| ||||| ||| | |||| ||| || || ||| || ||| ||| | Sbjct 5072 AAGCTGATGATCCTTTATTAACTTACTTATATGATGATGGACAACAGATTGAGCCTTTGT 5131 Query 163281 ATTTTATCCCAGTGATTCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGAT 163340 ||| | | ||| | |||||| | ||| || |||||||| || |||||| |||||||||| Sbjct 5132 ATTATGTTCCAATCATTCCAATGATTCTAGTTAATGGTACTGATGGTATAGGAACAGGAT 5191 Query 163341 GG 163342 || Sbjct 5192 GG 5193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177385627560