Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq18 219 8e-52 seq25 214 4e-50 seq3 84.2 4e-11 >seq18 Length=776017 Score = 219 bits (242), Expect = 8e-52 Identities = 181/221 (82%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| |||| ||| || || || || ||||| |||||||| ||| |||| || || ||| Sbjct 281296 ACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCCTCT 281237 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| || || |||||||||| | |||||||| || || |||||||||||||||||| Sbjct 281236 AATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCTTGA 281177 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 |||||||| |||||||||||||| || || ||||| ||||||||||| || ||||| Sbjct 281176 ATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGTCTTT 281117 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTT 82822 |||||||| ||||| ||||| |||||||| ||| ||||||| Sbjct 281116 CCTGTCAAAGTCTTAACAAAAATCTGCATAATTGTATTTTT 281076 Score = 188 bits (208), Expect = 1e-42 Identities = 167/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || | ||| || ||||| || ||||| |||||||| ||| |||| || |||||| Sbjct 281524 ACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCATCTTCT 281465 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| || || || ||||||| | ||||||||| || || ||||| |||||||||||| Sbjct 281464 AATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATCTTGA 281405 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 |||||||| |||||||||||||| || || ||||| || || ||||| || ||||| Sbjct 281404 ATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAAAGTGATTGTCTTT 281345 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || || ||||| |||||||| Sbjct 281344 CCCGTCAATGTTTTGACAAAAATCTGCAT 281316 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | | || || || || | ||| || ||||| || ||||| |||||||| Sbjct 281770 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAA 281711 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || ||||||| ||| || || || ||||||| | ||||||||| || || Sbjct 281710 AGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGA 281651 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| |||||||||||||||||||| || || || ||||| || || ||||| ||| Sbjct 281650 ATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACT 281591 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || ||||| |||||||| || || ||||| |||||||| Sbjct 281590 TCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281544 >seq25 Length=676938 Score = 214 bits (236), Expect = 4e-50 Identities = 184/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| | | || || ||||||| |||||| || || || ||||| |||||||| Sbjct 542006 ACCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGA 542065 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| | ||||||||||| | |||||||||||||||||| || | |||||||| || || Sbjct 542066 TAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGG 542125 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| || ||||||||||||||||||||||| ||||| || || |||||| || Sbjct 542126 GATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAAC 542185 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || ||||| || || || || |||||||| |||||||| Sbjct 542186 TTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 542233 >seq3 Length=365885 Score = 84.2 bits (92), Expect = 4e-11 Identities = 122/171 (71%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 144101 TATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGCCCCGCTATGAATACCCT 144160 ||| | |||||| |||||| | || || ||| | || |||| || || ||||| | | Sbjct 70630 TATTGCAAGAGCTTGGGATTTCAACAAGCCTATCATAGTTTGTCCTGCAATGAACAATTT 70689 Query 144161 TATGTGGGAACATCCTATTACAGAAAAACATATAGATACTTTAAAACATATGGGTTTCAT 144220 ||||||||||||||| ||||| || ||| ||||| ||| ||||| | | |||| | Sbjct 70690 TATGTGGGAACATCCGATTACTTTAAGACAAATAGACACTCTAAAATCTTTTGGTTATAA 70749 Query 144221 AGAAATAGAATGTATAGaaaaaaaaCTAGCCTGTGGAGACGTAGGAAATGG 144271 || |||| ||||| || ||| | || ||||| || ||| | ||||| Sbjct 70750 AGTAATATTTCCAATAGAGAAGAAATTGGCATGTGGCGA-GTATGGAATGG 70799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826860349153