Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 172 1e-37 seq4 86.0 1e-11 >seq1 Length=1292604 Score = 172 bits (190), Expect = 1e-37 Identities = 383/563 (68%), Gaps = 19/563 (3%) Strand=Plus/Minus Query 131464 TATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGA 131523 ||||||||| ||| | | || | || ||| | ||||||||| || | | |||| Sbjct 165193 TATGTATAAAAAAGCAGAAGCATCGTTTTGGGTTACTGAAGAGATTGACTTAAGTCAAGA 165134 Query 131524 TATTGATGATTGGGAAAAA-TTAACCTTGAA--TGAAAAAGATTTTGTTTCCAAAGTTCT 131580 || | |||||||||| |||| || ||| | | ||||| || | || || Sbjct 165133 TACTAGAGATTGGGAAAGTCTTAAA---GACCCTGAGAGACATTTTATTAAATACGTCCT 165077 Query 131581 TGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCA 131640 || ||||| || | |||||||| |||||||| ||||| | | | | |||||| | Sbjct 165076 AGCTTTCTTTGCTGCTAGTGATGGTATTGTTATGGAAAACTTGGCTGTCAATTTCCTAAG 165017 Query 131641 AGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTAT 131700 |||||| |||| || |||| || | || || |||||||| ||| |||| || Sbjct 165016 AGAAATACATATCCCAGAAGCAAGAATGTATTATGCATTTCAAATGGCTATTGAGCAAAT 164957 Query 131701 TCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAA 131760 ||||| || | ||||| || || ||||| || | ||| |||| || | | || Sbjct 164956 TCATAATGAAACATATTCCTTGTTAATTGACAGATATATTAC---TGAA-ATAAAAGAAC 164901 Query 131761 T--AAAT--TATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGG 131816 |||| | ||||| ||| | | | || ||||| ||||||||||||||||||||| Sbjct 164900 GTCAAATGCTTTTTGAGGCTATTTCTCATATTTCTGCAGTTAAAAAGAAAGCAGAATGGG 164841 Query 131817 CTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTT 131876 | | ||||||||| | |||| | | |||| || ||| || | | || | Sbjct 164840 CAACTAAATGGATGAATAATGA--AAGAT-CTTTTGCTGAGAGAATTATTGGATTCTGTG 164784 Query 131877 GTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGT 131935 ||| ||||| || | ||||| ||| ||||| |||||||| ||||||||||| |||||| Sbjct 164783 CTGTAGAAGGAATTCTTTTTTCTGGTAGCTTT-TGTGCTATATTTTGGCTTAAAAAGCGT 164725 Query 131936 GGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCAT 131995 ||| | ||||||||||| |||| || ||| || | || | ||||||| ||| ||| Sbjct 164724 GGACTTATGCCTGGACTTACATTCTCTAATGAACTTATTAGCCGTGATGAAGGATTACAT 164665 Query 131996 ACTGAATTTGCTATATTAATCTA 132018 |||| |||||| ||||| || Sbjct 164664 GCTGACTTTGCTTGCTTAATATA 164642 >seq4 Length=889257 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 278200 TGAAATGATATTTGGGAATTTATTGACATCTACTAATTACAAGGAAGATGAAGAGCGACT 278259 |||| |||| ||||| ||||||| || || ||||||| | || ||||||| || | Sbjct 2688 TGAATTGATTTTTGGCCATTTATTAACTTCAGATAATTACGATGATAATGAAGATAGAGT 2747 Query 278260 CACAGGAGGCAAAAATGGATATGGGGCAAAGCTGACAAATATCTTCTCAAAATGCTTTGA 278319 || ||||| | |||||| | ||| ||||| || ||||||||||| || || ||| | Sbjct 2748 TACTGGAGGGAGAAATGGTTTTGGAGCAAAACTTACAAATATCTTTTCTAAGGAATTTAA 2807 Query 278320 AGTTGAAACTGTTGATAAAAAGACT 278344 | | ||| || |||||| || ||| Sbjct 2808 AATAGAATGTGGTGATAATAATACT 2832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812389436947