Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq18 116 3e-21 seq25 104 2e-17 >seq18 Length=776017 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||||| || ||||| | ||||| | || || ||| ||| | Sbjct 281316 ATGCAGATTTTTGTCAAAACATTGACGGGAAAGACAATCACTTTAGAGGTTGAA-CCATC 281374 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | | || || || | ||||| ||| ||| ||||| ||||| || || || ||||| Sbjct 281375 GGACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCA 281434 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | || | || || || ||| | ||||||| |||| | | |||||||| Sbjct 281435 ACAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAA 281494 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||| ||||| | |||||||| |||||| | ||||| || Sbjct 281495 TATTCAAAAAGAGTCCACTTTACATTTAGTCTTAAGACTCAGAGGTGG 281542 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||||| || ||||| | ||||| | ||||| ||| ||| | Sbjct 281544 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAA-CCATC 281602 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | | || || ||| | || || ||| ||| ||||| ||||| || || || ||||| Sbjct 281603 GGACACAATTGAGAACGTTAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCA 281662 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | || | || || || ||| | ||||||| |||| | | |||||||| Sbjct 281663 ACAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAA 281722 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||| |||||||| ||||| | ||||| || || ||| | ||||| |||| Sbjct 281723 TATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGACTTAGAGGTGGAA 281772 Score = 95.1 bits (104), Expect = 1e-14 Identities = 177/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 25150 TATAAGTAGTTTTCAATTAA-ACAAC-ATGCAAGTGTTTGTAAAAACATTAACCGGAAAA 25207 |||| | | | ||||| || |||| ||||| | ||||| || || || || ||||| Sbjct 281061 TATAGGGATTGTTCAAAAAATACAATTATGCAGATTTTTGTTAAGACTTTGACAGGAAAG 281120 Query 25208 TCGATCACGATCGAAGTCGAAGCCAACG-ATACTATCGAGCAAGTAAAACAAAAAATTAC 25266 | ||||| | ||||| ||| ||| || | || || || | ||||| ||| ||| Sbjct 281121 ACAATCACTTTGGAAGTTGAA-CCATCGGACACAATTGAAAATGTAAAGGCAAAGATTCA 281179 Query 25267 CGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGA 25326 ||||| || || || || || ||||| || | | || | | || || ||| | || Sbjct 281180 AGATAAGGAAGGAATTCCACCTGATCAACAGCGTTTAATCTTTGCAGGGAAGCAATTAGA 281239 Query 25327 AGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| |||| | || ||||||||||||||||| || ||||| | |||||||| || Sbjct 281240 GGATGGAAGAACTCTCTCTGATTACAATATTCAAAAGGAGTCCACTTTGCATTTAGTCTT 281299 Query 25387 AAGATTGAGAGGAGG 25401 |||| | ||||| || Sbjct 281300 AAGACTCAGAGGTGG 281314 >seq25 Length=676938 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | ||||||||||| ||||| || || | ||||| | ||||| ||| | Sbjct 542236 AAGATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCT 542177 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || ||||| ||| | |||||| ||| ||| || ||||| ||||| || || ||| Sbjct 542176 TCAGACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGAT 542117 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || || | || || | | || |||||| | ||||| | ||| | | | |||||| Sbjct 542116 CAACAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTAC 542057 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| || || || | || || || || ||| | ||||| || Sbjct 542056 AATATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGACTAAGAGGTGG 542007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094249780640