Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq25 100 2e-16 seq18 93.3 4e-14 >seq25 Length=676938 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||||||||| || || ||||| || |||||||||||||| || | | | |||| Sbjct 542021 CAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTC 542080 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || || | || |||||||||||||| || || | ||| ||||| || Sbjct 542081 TTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTC 542140 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||| ||| | | || | |||||||| | ||||||||| | || || | Sbjct 542141 TTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGT 542200 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || | |||||| ||||| || ||||| Sbjct 542201 CTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 542233 >seq18 Length=776017 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||||||||||||||| || || |||||||| |||||||| || | | | | || Sbjct 281756 CAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTTCTTCCATC 281697 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | || || || ||| | || | ||| |||||||| || || | ||||| ||||| Sbjct 281696 TTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATC 281637 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||| || | | | || | ||||| | | ||||||||||| ||| || | Sbjct 281636 TTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACTTCTAAAGTGATTGT 281577 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || |||| ||||| ||||| || |||||| Sbjct 281576 CTTTCCTGTCAATGTTTTGACAAAAATCTGCATA 281543 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCT 27095 || || |||||||| || || ||||||||||||||||| || | | | | ||| Sbjct 281527 AAGACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCATCT 281468 Query 27096 TCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCG 27155 || | || || || ||| | || | ||| |||||||| || || | ||||| ||||| Sbjct 281467 TCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATCT 281408 Query 27156 GCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGAT 27215 ||||| || | |||| | ||||| | | |||||| |||| ||| || | Sbjct 281407 TGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAAAGTGATTGTC 281348 Query 27216 TTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||||| ||||| ||||| || |||||| Sbjct 281347 TTTCCCGTCAATGTTTTGACAAAAATCTGCATA 281315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934260170024