Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 >seq1 Length=1292604 Score = 134 bits (148), Expect = 2e-26 Identities = 711/1111 (64%), Gaps = 32/1111 (3%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || |||| || |||||||||| | ||| || ||||| || ||||| | ||| || Sbjct 443722 TATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTTACCTAATATTTGCGAGGTAGAC 443663 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || || |||||||| || || | ||| ||||| || || | || || | ||| Sbjct 443662 GCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAGCCCATACTTAGAAATCCTTTCT 443603 Query 110828 TTGAGAACATCCCAGTCGTA--GTTGAGCTT--GGTTTCACCTTCCCACATGTCAAACTG 110883 || || |||||||||| | | || | || || || | ||||||||||||| || Sbjct 443602 TTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTTAAC-TCCCCACATGTCAAATTG 443544 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 || | |||| |||||| || || | | |||||||| | || | ||| || Sbjct 443543 TAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTCATACGGCCCATCTTTTTCTGC 443484 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA- 111002 | || || || ||||| || | || | ||| || |||||| || ||| | Sbjct 443483 GAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAACTTCAAAAATCTCCTTATTTAA 443424 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATG-CGTAGCGGCACAAAATAAATACATCCGCGAGA 111061 | |||| | |||| ||||| ||| ||| | || || || ||||| ||| || || Sbjct 443423 TTTCCTAGCCTTC-TCTGATTCATATGGCATA-CGAAGCATCATAAAGCAATCTGCAAGT 443366 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG 111121 ||||||||||| | |||| || | ||| | ||| || ||| || ||| | Sbjct 443365 CCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGATTTGAGTTTTTA-CATTCTGG--G 443309 Query 111122 GGATAAAAATTTCTGT---CAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || || ||| || || ||| | | ||||| ||| | |||| || | || | | Sbjct 443308 AGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCCTCGTAATAACTCTCGTAACT 443249 Query 111179 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 111238 || | | || ||| | || || || | |||| | ||| |||| ||||| | Sbjct 443248 TCCTTTAACTTATCAAAGTCGAATGTTTTGTTATCTTTGTCAACAAACTTCGGAAGACCA 443189 Query 111239 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT-GTGTACTCTAAAATTTCTGT 111297 || || |||| || |||||||| | |||| | || |||||||||| |||||| || Sbjct 443188 ATGGACGCCAGGTTACAAACAGCAATTTCATT-TGCGCTAGTGTACTCTATAATTTCGGT 443130 Query 111298 ACATAAGTT---GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT-CTTGTTGC 111353 ||||| || |||| ||| ||||||||||| || ||||||||||| || | || Sbjct 443129 GCATAAATTACTGGAAAC---AATAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGC 443073 Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413 | || ||||||||| ||| | ||||| || || || | || | || || || Sbjct 443072 A-GCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAA 443014 Query 111414 TCCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTG 111472 ||||| || ||| || | | | | | || |||| | ||||||| | Sbjct 443013 ACCAAAGTTTCTGCGCCT-TCATAGTTTTTCTTCCGCGGCCCTGCTTTTCGTACTCTTCA 442955 Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACA 111531 || || | |||||| |||||| | || | ||| ||| || || ||||| Sbjct 442954 TATAGTTTCTTAAACTCATCACCCCAAACATC-TTGCAACCCCCTGCATTCATCCGGACA 442896 Query 111532 GAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 | ||||| ||| | ||| |||||||| || ||| || || || |||| ||| || Sbjct 442895 CATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAG 442836 Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 || | |||||| || | || | ||| || | || || || || || |||| Sbjct 442835 GGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAAT 442776 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG--- 111708 ||||||| | ||| | ||||| ||||| | ||| | ||| || | ||||| || Sbjct 442775 AAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTT 442716 Query 111709 ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768 | ||| |||| | | ||| | || || | ||| | ||||| | ||||||||| | Sbjct 442715 CCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAG 442656 Query 111769 ACCATCTGATTGACCATTTGTCCCCCGAATA 111799 |||| || ||||| || ||||||||| Sbjct 442655 TCCATTAGACCTTCCATTGGTACCCCGAATA 442625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031788039200