Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 >seq1 Length=1292604 Score = 123 bits (136), Expect = 3e-23 Identities = 697/1099 (63%), Gaps = 44/1099 (4%) Strand=Plus/Plus Query 104506 TATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGC 104565 ||||||||| || ||||| || |||| | ||||||||| | ||||| | ||| | Sbjct 442625 TATTCGGGGTACCAATGGAAGGTCTAATGGACTGATTCCAATGTTACGCGTTTATAATGA 442684 Query 104566 CACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCT 104622 || || | ||| | | |||| ||| | || ||||| | || ||| | ||| | Sbjct 442685 TACTGCTAGATATATTGACCAAGGTGGAGGGAAACGCAAGGGTGCGATTGCAATTTATTT 442744 Query 104623 TGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGA 104682 ||||| ||||| | ||| | ||||||| |||| | | || || || | || Sbjct 442745 GGAGCCGTGGCATGTAGATGTTGTGGAGTTTATTGAAATAAGAAAGAATCATGGAAAAGA 442804 Query 104683 GGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 104742 |||| | | ||||| || ||||| | || || ||| |||| ||||| || ||| |||| Sbjct 442805 GGAGATGAGATGCCGTGACCTCTTTCCTGCCCTTTGGGTTCCTGATCTATTTATGGAGAG 442864 Query 104743 AGTTGAGGAGAGTGGCA-ATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCC 104800 |||||| | || | ||||| |||| | ||||| || || ||| ||| | Sbjct 442865 GGTTGAGAA-AGACCAAGATTGGACTCTTATGTGTCCGGATGAATGCAGGGGGTTGCAA- 442922 Query 104801 GATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCG 104860 |||| |||||| |||||| | || || | ||||||| ||| ||| | | | Sbjct 442923 GATGTTTGGGGTGATGAGTTTAAGAAACTATATGAAGAGTACGAA-AAGCAGGGCCGCGG 442981 Query 104861 A-------CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAAC 104913 | || || || || || | || | || ||| |||| |||||| Sbjct 442982 AAGAAAAACTATGAAGGCGC-AGAAACTTTGGTTTTTAATCCTA----CAAG-CTCAAAT 443035 Query 104914 CGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAA 104973 || || || || || | ||| ||||| ||||| || |||||||| || || Sbjct 443036 TGAAACAGGAACGCCTTTCATCTGCTACAAGGACGCTGCGAATAGTAAGAGTAACCAGAA 443095 Query 104974 GAATTTGGGTGTGATCAAGAGTTCCA---ATCTCTGTACAGAAATCTTGGAATTTACAGA 105030 |||||||| || | ||||| || | || || ||||| | || | || Sbjct 443096 AAATTTGGG---GACTATTGTTTCCAGTAATTTATGCACCGAAATTATAGAGTACACTAG 443152 Query 105031 CAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCC 105090 | | |||| | ||||| |||||||| || || || | ||| || |||| ||| || Sbjct 443153 CGCAAATGAAATTGCTGTTTGTAACCTGGCGTCCATTGGTCTTCCGAAGTTTGTTGACAA 443212 Query 105091 AGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAA 105150 ||| | || ||||| || | ||| || | | |||||||||| | | | || | || Sbjct 443213 AGATAACAAAACATTCGACTTTGATAAGTTAAAGGAAGTTACGAGAGTTATTACGAGGAA 443272 Query 105151 CCTAAACAGAGTTATTGATA---GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAA 105207 |||||| | || ||||| || ||| || | | ||| || | || || || Sbjct 443273 TTTAAACAAAATTGTTGATCACGGATATTATTCTCTCCC--AGAATG-TAAAAACTCAAA 443329 Query 105208 TATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG 105267 | | | ||| || || |||| | |||||||| || || || ||| || || | Sbjct 443330 TCTAAAACATCGCCCGCTTGGAATTGGTGTTCAAGGACTTGCAGATTGCTTTATGATGCT 443389 Query 105268 TCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA-TGCGCGCATATTTGAGACCA 105326 ||| ||| ||| || || |||| ||||||| || | | || ||||| | Sbjct 443390 TCGTATGCCATATGAATCAGA-GAAGGCTAGGAAATTAAATAAGGAGATTTTTGAAGTTA 443448 Query 105327 TGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAA 105386 | ||| | || || || ||||| |||| ||| | ||||| ||||| || ||||||| Sbjct 443449 TTTATTATGCGGCGCTCGAGGCTAGTTGCGAGCTCGCAGAAAAAGATGGGCCGTATGAAA 443508 Query 105387 CCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGA 105446 | | | || || || || |||| | || |||||||| ||||||| || | || Sbjct 443509 CGTATTCTGGGTCACCCGCGAGTAAAGGTATTCTACAATTTGACATGTGGGGAGTTAAGC 443568 Query 105447 CCAA------GCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTC 105500 | | |||| | ||||||||| | || || ||| | || || | || | Sbjct 443569 CTGATTCTGGGCTT---TGCGACTGGGATTCACTTAAAGAAAGGATTTCTAAGTATGGGC 443625 Query 105501 TTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 105560 | ||||| || || || ||||||||||| || || || ||| | ||||| || |||| Sbjct 443626 TCCGTAATTCACTTCTAATTGCTCCAATGCCTACTGCGTCTACCTCGCAAATATTAGGTA 443685 Query 105561 ATAATGAATGCTTTGAACC 105579 | || ||| | |||||||| Sbjct 443686 ACAACGAAAGTTTTGAACC 443704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260603149480