Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 >seq1 Length=1292604 Score = 116 bits (128), Expect = 4e-21 Identities = 175/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 19424 CCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGC 19483 |||||| | ||||| | || | || || || || | |||| || || || |||||| Sbjct 442662 CCAATGTTACGCGTTTATAATGATACTGCTAGATATATTGACCAAGGTGGAGGGAAACGC 442721 Query 19484 AAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAA 19543 ||||| || | || || || | ||||| ||||| | || || |||| || | ||| Sbjct 442722 AAGGGTGCGATTGCAATTTATTTGGAGCCGTGGCATGTAGATGTTGTGGAGTTTATTGAA 442781 Query 19544 CTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGG 19603 | | ||| || || | ||||||||| | || || |||||||| | ||| | ||| Sbjct 442782 ATAAGAAAGAATCATGGAAAAGAGGAGATGAGATGCCGTGACCTCTTTCCTGCCCTTTGG 442841 Query 19604 ATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCG 19663 |||| || ||||| ||||||| ||||||||| ||| |||| ||| || ||||| ||| Sbjct 442842 GTTCCTGATCTATTTATGGAGAGGGTTGAGAAAGACCAAGATTGGACTCTTATGTGTCCG 442901 Query 19664 CACGAATGC 19672 | |||||| Sbjct 442902 GATGAATGC 442910 Score = 114 bits (126), Expect = 1e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 79315 ACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCA 79374 ||||| ||| ||| ||| || | ||| ||||| || ||| || | ||| |||||| Sbjct 442927 ACATCTTGCAACCCCCTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCA 442868 Query 79375 ACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATC 79434 ||| ||||||| || || || || | ||| ||||| | |||||||| ||||| | |||| Sbjct 442867 ACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATC 442808 Query 79435 TCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGC 79494 ||||| | || || ||| | | || | ||| |||| | || | ||||||||| Sbjct 442807 TCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGC 442748 Query 79495 TCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGT 79540 |||| ||| || || | || ||||||||| || || || || |||| Sbjct 442747 TCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTCCACCTTGGT 442702 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 59919 GCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATTTGCA 59978 ||||||||| | |||||||||||||| | | ||||||| | || | ||| ||||| Sbjct 164865 GCAGTTAAAAAGAAAGCAGAATGGGCAACTAAATGGATGAATAATGAAAGATCTTTTGCT 164806 Query 59979 CAACGTCTCATAGCTTT-TGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG 60036 | | | || | || || ||| || |||||||| | || ||||| || |||| Sbjct 164805 GAGAGAATTATTGGATTCTG--TGCTGTAGAAGGAATTCTTTTTTCTGGTAGCTTTTGTG 164748 Query 60037 CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGA 60096 |||| || ||||| ||||||||||| || ||||| || || | ||||| || || || | Sbjct 164747 CTATATTTTGGCTTAAAAAGCGTGGACTTATGCCTGGACTTACATTCTCTAATGAACTTA 164688 Query 60097 TTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 || ||| || || || | ||| || ||||| Sbjct 164687 TTAGCCGTGATGAAGGATTACATGCTGACTTTGC 164654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524614872880