Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 132 5e-26 >seq1 Length=1292604 Score = 132 bits (146), Expect = 5e-26 Identities = 272/399 (68%), Gaps = 4/399 (1%) Strand=Plus/Plus Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 |||| ||||| ||||| |||||||| || | || || || | ||||||||||| | | Sbjct 442702 ACCAAGGTGGAGGGAAACGCAAGGGTGCGATTGCAATTTATTTGGAGCCGTGGCATGTAG 442761 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660 | || |||||||| | || | | |||||| || | || |||||| | ||||||| Sbjct 442762 ATGTTGTGGAGTTTATTGAAATAAGAAAGAATCATGGAAAAGAGGAGATGAGATGCCGTG 442821 Query 53661 ACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 |||| ||| | || || ||| |||| || || || ||| | | ||| ||||| ||| | | Sbjct 442822 ACCTCTTTCCTGCCCTTTGGGTTCCTGATCTATTTATGGAGAGGGTTGAGAAAGACCAAG 442881 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGT 53780 | ||| || ||||| ||| | || ||| || | || | ||| | ||||| |||| Sbjct 442882 ATTGGACTCTTATGTGTCCGGATGAATGCAGGGGGTTGCAAGATGTTTGGGGTGATGAGT 442941 Query 53781 TTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAA-GGTCAAGGCG 53839 |||| | | ||| ||||| | ||||||||| ||||| || | |||||| Sbjct 442942 TTAAGAAACTATATGAAGAGTACGAAAAGCAGGGCCGC-GGAAGAAAAACTATGAAGGCG 443000 Query 53840 CGTGAGGTATGGGATGCAATCCT-CAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTG 53898 | | | ||| | |||||| |||| || | || || |||||||| | ||| || Sbjct 443001 CAGAAACTTTGGTTTTTAATCCTACAAG-CTCAAATTGAAACAGGAACGCCTTTCATCTG 443059 Query 53899 CTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 ||||||||| | | || ||||| |||||||| || Sbjct 443060 CTACAAGGACGCTGCGAATAGTAAGAGTAACCAGAAAAA 443098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| || ||| | |||||||| | ||| || | |||||| || || | ||| ||| Sbjct 164654 GCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCA 164713 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||||||||||||||| || | |||||| || ||||| ||| |||| || | || Sbjct 164714 GGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAATT 164773 Query 74871 CCTTCGACA 74879 ||||| ||| Sbjct 164774 CCTTCTACA 164782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215815314600