Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq25 181 9e-41 seq18 154 1e-32 >seq25 Length=676938 Score = 181 bits (200), Expect = 9e-41 Identities = 168/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||||||| | || || ||| | || || | ||||| ||||| || Sbjct 542233 ATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCTTCA 542174 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| ||| ||||||||||||||||| || ||||| |||||| Sbjct 542173 GACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAA 542114 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || ||||||||||||||| || ||| | || |||||||| Sbjct 542113 CAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTACAAT 542054 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||||||||| || || || ||||| ||| Sbjct 542053 ATTCAAAAGGAGTCTACTTTGCACTTGGTATTG 542021 >seq18 Length=776017 Score = 154 bits (170), Expect = 1e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| || ||| | || ||| | ||||| ||||| || Sbjct 281544 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCG 281603 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||| |||||||| || || || || ||||| |||||| Sbjct 281604 GACACAATTGAGAACGTTAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAA 281663 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||| || || ||||| ||||| | || |||| |||||||| Sbjct 281664 CAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 281723 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || ||||| ||||| || ||||||||||| ||| Sbjct 281724 ATCCAAAAAGAGTCCACTTTACATTTGGTATTG 281756 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| | || ||| | ||||| ||||| || Sbjct 281088 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACAATCACTTTGGAAGTTGAACCATCG 281147 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| |||||||| || ||||| || ||||| |||||| Sbjct 281148 GACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAAGGAATTCCACCTGATCAA 281207 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | || || || ||||| || || | || | || |||||||| Sbjct 281208 CAGCGTTTAATCTTTGCAGGGAAGCAATTAGAGGATGGAAGAACTCTCTCTGATTACAAT 281267 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||||||||||||| || || ||||| || || Sbjct 281268 ATTCAAAAGGAGTCCACTTTGCATTTAGTCTT 281299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918253215040