Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 208 7e-49 seq26 84.2 2e-11 >seq1 Length=1292604 Score = 208 bits (230), Expect = 7e-49 Identities = 573/859 (67%), Gaps = 27/859 (3%) Strand=Plus/Plus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||| ||||| |||| |||||| |||||||| ||||| |||| | |||||| | Sbjct 164361 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 164420 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCA 4377 |||| |||| || ||||||| | |||||| ||| | ||||| | ||| | Sbjct 164421 CCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGGA 164480 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-AT 4436 || |||||||||||||| ||||| || ||| ||| |||| |||||||| | || Sbjct 164481 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCCAATAAGAT 164540 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 | ||||| || | || | ||| | | ||||| | || ||||||| ||| || Sbjct 164541 CA-ACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAATT 164599 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTA-TCCAAACAATAAACACGCAAA 4555 | || || | || | | | |||||| | |||| | | | ||| || ||||| Sbjct 164600 TGTTGTACTCTAGAAGTTGGTAGTTTATATT-TAAGAGCTTTGTATATTAAGCAAGCAAA 164658 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 ||| ||| || ||||| || | |||||| ||||| ||||| || || | ||| ||||| Sbjct 164659 GTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAGGCAT 164718 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | || | ||||||||||||||||||||| ||| |||||||| | || ||||| Sbjct 164719 AAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAATTCCTTC 164778 Query 4676 TACGGCGGCAAACGCTACTAA-TCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATT 4734 ||| || || | | | ||| || | || || || || | || ||||||| Sbjct 164779 TACAGC-ACAGAATCCAATAATTCTCTCAGCAAAAGATCT---TTCATTATTCATCCATT 164834 Query 4735 TTAATGCCCAGTTAGCTTTTTTCTTAAC-GCACGGAATTGTG-TATATAGCGTTAAATA- 4791 | |||||| | ||||| || ||||| ||| ||| | || | ||||| | ||| | Sbjct 164835 TAGTTGCCCATTCTGCTTTCTTTTTAACTGCA--GAAATATGAGAAATAGCCTCAAAAAG 164892 Query 4792 -ATTT-ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 |||| || || || | | || |||||| |||| |||| | | ||| |||| Sbjct 164893 CATTTGACGTTCTTTTATT---TCAGTAATATATCTGTCAATTAACAAGGAATATGTTTC 164949 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909 | ||| || | || ||||| || |||||| | ||| | ||| ||||||| | || Sbjct 164950 ATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGATATG 165009 Query 4910 AACTTC-GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 | ||| ||| |||| | | | |||||||| | || ||||| ||||| || |||| Sbjct 165010 TATTTCTCTTAGGAAAT-TGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAGCAA 165068 Query 4969 AAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGG---CTTAAGTTTTTTCCAGT 5025 | || || | || | || ||| | ||| ||||| ||||| ||| ||| | Sbjct 165069 AGAAAGCTAGGACGT---ATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTCCCAAT 165125 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTT 5085 ||||| | |||| |||| |||||| | ||||||||| ||||| ||||||| Sbjct 165126 CTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTTTT 165185 Query 5086 TGTACATAGACCAAATATC 5104 | |||||| |||||||||| Sbjct 165186 TATACATAAACCAAATATC 165204 >seq26 Length=437080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 114546 AACAAAGTTAATAAGACAAGCCAACGAAGGCAGAAAAAGAGGTGGAGGAATTAAGTTTGG 114605 ||||| ||||| |||||| | | ||||| || ||||| || ||| ||| |||||| Sbjct 149963 AACAATGTTAACGAGACAACCAAGAGAAGGAAGGGCAAGAGAAGGTGGACTTAGGTTTGG 149904 Query 114606 AGAAATGGAGCGAGATTGTATAATAGCACACGGTGCCGCAAACACTATTAACGAAATACT 114665 |||||||||||| |||||||| ||| | || ||| | ||||| | | || |||| ||| Sbjct 149903 AGAAATGGAGCGTGATTGTATGATATCTCATGGTTCAGCAAAAATGTTGAAAGAAAGACT 149844 Query 114666 T 114666 | Sbjct 149843 T 149843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049459473991