Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 304 2e-77 >seq1 Length=1292604 Score = 304 bits (336), Expect = 2e-77 Identities = 1199/1861 (64%), Gaps = 50/1861 (3%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || || || |||||| | |||| || || | |||||| || || |||||||||| Sbjct 444100 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 444041 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTG-TCAGTTTGGAATAACTAGGATCGGCTAT 76900 || |||| || ||||||||||| || | | |||| || | ||| || | || Sbjct 444040 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAA-AGTTAGCATTTTCCAT 443982 Query 76901 ATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTAT 76960 ||||||||| | |||||| || || | | || ||||| || ||||| | || Sbjct 443981 ATGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGAT 443922 Query 76961 AATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG 77020 | |||||||| ||| ||||||| ||||| ||| || || || || || | Sbjct 443921 TACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGAT 443862 Query 77021 -GTTTG--TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTA----TATCAT 77073 || | |||||||||| ||| || || || || | || |||| | |||| Sbjct 443861 TGTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATT-TTGTTTAAGCCTGTCAT 443803 Query 77074 C--ATTCCACAATTTCCTCTCTGTTAA--AACTC--TAAGGAGATGAGGATTAACTATTT 77127 | || | ||| ||| || || || | || | ||||||||| |||| Sbjct 443802 CCCATAGCCCAAGTTC---------AAGCAAGTCATTGAGTAAATGAGGATTCACTACAA 443752 Query 77128 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 77187 |||||| ||||| | ||| |||||| || ||||| ||| ||||||| | | || Sbjct 443751 AAAATTCACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTT 443692 Query 77188 CATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTAT 77247 | ||||| || || ||||| | ||||| ||||| ||||| || || | | | || Sbjct 443691 CGTTGTTACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAAT 443632 Query 77248 TTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA- 77306 | | ||| |||| | || | ||||| || | | ||| || ||||| | ||| Sbjct 443631 TACGGAGCCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAAT 443572 Query 77307 --GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTAT 77364 || ||| |||| | || |||||||||| || ||||| || ||| ||| || Sbjct 443571 CAGGCTTAACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAAT 443512 Query 77365 ATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAAT 77424 | |||||||| || || ||| |||| || || || ||||| || || | || | |||| Sbjct 443511 ACGTTTCATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAAT 443452 Query 77425 AAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACGGATAA 77483 |||| ||| ||||||| |||||| | | | | |||| | | ||| | || | Sbjct 443451 AAATAACTTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTCTGAT-TCATATGGCATA 443393 Query 77484 TGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTC 77543 | | | |||||| |||||| | ||| ||||| ||||| |||| || | |||| | Sbjct 443392 CGAAGCATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTT 443333 Query 77544 TTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATG-TCTATAATTTTATTGAG 77602 ||| || ||||| |||||| | || |||||| | || || | |||||| || | Sbjct 443332 AGATTTGAGTTTTTACATTCTGGGAGAGAATAATA-TCCGTGATCAACAATTTTGTTTAA 443274 Query 77603 ATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC---ATC 77659 ||| || || ||| | || ||||||| ||| ||| || ||| || ||| Sbjct 443273 ATTCCTCGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTTATC 443214 Query 77660 TAT---AACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGC 77716 | | ||||||| | | | | || || || || |||||||| || | ||||| || Sbjct 443213 TTTGTCAACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGC 443154 Query 77717 GTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTG 77776 | | | || | ||| || ||||| |||| |||||| | ||||| |||| ||||| Sbjct 443153 GCTAGTGTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTT 443094 Query 77777 TTGGTTGCTCTTTTTATT-GCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835 ||||| ||||| |||| ||| | |||||| || || || || || || ||||||| Sbjct 443093 CTGGTTACTCTTACTATTCGCA-GCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAA 443035 Query 77836 TCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATC--- 77892 | || | || | || | ||| | | ||| || | |||||| ||| || Sbjct 443034 TTTGAGCTTGTAGGATTAAAAACCAAA-GTTTCT-GCGCCT-TCATAGTTTTTCTTCCGC 442978 Query 77893 GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCA 77952 | | || |||| || | |||||| | ||| ||||| ||||||||||| | || Sbjct 442977 GGCCCTGCTTTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCA 442918 Query 77953 ATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCA 78012 | || |||||||| || ||||| | | ||| || |||| || ||| | | || Sbjct 442917 ACCCCCTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCA 442858 Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072 |||| |||||||| | ||| || ||| ||| || || ||| ||| || || |||| Sbjct 442857 TAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTC 442798 Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132 | ||||||| | | || | |||||||| || ||| |||||| || || | ||| | Sbjct 442797 CATGATTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAA 442738 Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192 |||| || | || ||||| || || || || |||||||| || || | ||||| Sbjct 442737 TTGCAATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTAT 442678 Query 78193 AAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTC 78252 |||| | ||||||||||| | || ||||| ||||||| || || |||||| | Sbjct 442677 AAACGCGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGAATATACGAGC 442618 Query 78253 CACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTA--GATATTAG 78310 | || | | ||||||||| | | | || | || || || ||||| ||||| Sbjct 442617 CCGTTCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATT-- 442560 Query 78311 AGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAG 78370 || || | | | || || | ||||| |||||| || || || | || | Sbjct 442559 TGCACATTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAA 442500 Query 78371 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATG 78430 |||||| ||||||||| | ||| || | || || | || || | ||||| Sbjct 442499 AAAACAAGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATG 442440 Query 78431 CGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTG 78490 ||||| | |||| || | || || |||||||| | || | || || || | Sbjct 442439 GGTAAAATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCA 442380 Query 78491 ATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATT 78550 ||| || || | || | ||| | | ||| || ||||| || || |||| |||| Sbjct 442379 ATGTATACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATC 442320 Query 78551 TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 ||| | | | || || |||| |||||||| || ||||||| | ||| ||| || Sbjct 442319 AATTCTGAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATC 442260 Query 78611 T 78611 | Sbjct 442259 T 442259 Score = 201 bits (222), Expect = 2e-46 Identities = 571/866 (66%), Gaps = 16/866 (2%) Strand=Plus/Plus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||||||||| |||||||||| || || | || || || ||||| ||||| |||| Sbjct 164347 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 164406 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAA-ATC 47955 | ||| ||| ||||| |||| || |||||| |||| |||||||| | ||| Sbjct 164407 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 164466 Query 47956 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAAT 48015 | | | ||| |||||||| || || ||||| |||||| ||| | | | | | Sbjct 164467 CAGAG-CAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGT 164525 Query 48016 TCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAG 48075 ||||||| ||||| | ||| || || | || |||||| | | ||| | | |||| Sbjct 164526 TCATTCCAATAAGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAG 164585 Query 48076 CATCCACTATTATCGATGTTACCGTTTCCTC--ACTTGGTGG---ATACAACAAATGTTT 48130 | || || || |||| || || | ||||| | ||| | | ||| Sbjct 164586 CTTCTGAGATAATT--TGTT---GTACTCTAGAAGTTGGTAGTTTATATTTAAGAGCTTT 164640 Query 48131 AAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGA 48190 | ||||| || ||||| ||| ||| | |||||||| | ||||| | ||| ||||| Sbjct 164641 GTATATTAAGCAAGCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGA 164700 Query 48191 AAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-C 48249 ||||| || || ||||| |||||||| ||||| ||||||||||| || | |||| | | Sbjct 164701 GAATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCA-CAAAAGCTAC 164759 Query 48250 CAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT 48309 ||||||| | || |||||||| || ||| | ||| |||||| | || || Sbjct 164760 CAGAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTTT 164819 Query 48310 CGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369 | || | ||||| |||||| || || ||||| || || || || | Sbjct 164820 CATTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAA 164879 Query 48370 TAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGAC 48429 |||| | ||| || | | ||| || | || ||| || | || ||||| | Sbjct 164880 TAGCCTCAAAAAGCATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGG 164939 Query 48430 TATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTT 48489 ||| |||| ||||| | ||||| ||||| |||||| | ||| | ||| |||| Sbjct 164940 AATATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTT 164999 Query 48490 CTGTGATCTGTACCTC-CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCA 48548 ||| ||| |||| || | || |||| | ||||||| || || | || || |||||| Sbjct 165000 CTGGGATATGTATTTCTCTTAGGAAATTGA-CAGCCAAGTTTTCCATAACAATACCATCA 165058 Query 48549 CTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA 48608 ||||||||||| || |||| || | ||||||||||| | | || | | || | Sbjct 165059 CTAGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTT 165118 Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668 | ||| || | |||||| || || | ||||||| |||||| ||||| ||| Sbjct 165119 TCCCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCT 165178 Query 48669 GCTTTTTTATACATATTCCATATATC 48694 ||||||||||||||| ||| ||||| Sbjct 165179 GCTTTTTTATACATAAACCAAATATC 165204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668565549280