Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq18 105 2e-17 >seq18 Length=776017 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| | ||| | ||| | ||| ||||| ||||| || |||||||| | | |||| Sbjct 281308 CTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTT 281249 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| |||| ||||| || ||||| | | ||| || || | | |||||| Sbjct 281248 CTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCT 281189 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| ||| || ||| | || | |||| || || ||||| | | Sbjct 281188 TCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAA 281129 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || | |||||| || || | |||||| Sbjct 281128 GTGATTGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 281088 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| | ||| | ||| | ||| ||||||||||| || |||||||| | | |||| Sbjct 281536 CTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGAATATTGTAATCAGAAAGAGTT 281477 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||||| ||||| |||||||| | | || || || | | ||||| Sbjct 281476 CTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCC 281417 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| ||| || ||| | || | |||| || || || || | | Sbjct 281416 TCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAAA 281357 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| | || || || || | |||||| Sbjct 281356 GTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 281316 Score = 96.9 bits (106), Expect = 8e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | ||| | ||| |||||||||||||| |||||||| | | |||| Sbjct 281764 CTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTT 281705 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||||| ||||| |||||||| | | || || || | | ||||| Sbjct 281704 CTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCC 281645 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| ||| || || |||| | |||| || || ||||| | | Sbjct 281644 TCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACTTCTAAA 281585 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || | || || || || | |||||| Sbjct 281584 GTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 281544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820400850117