Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq18 181 2e-40 seq25 149 1e-30 seq4 122 2e-22 >seq18 Length=776017 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 282890 TACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTC 282949 ||||| |||||| ||| ||||||||||| ||||| |||| ||| || | ||||| || Sbjct 281753 TACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTTCTTCCATCTTC 281694 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 || ||| ||||| || ||||| ||||||||||| ||| ||||| |||||||| ||||| Sbjct 281693 TAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATCTTG 281634 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 |||||||| || ||| | || || |||||||| | ||| ||||| | |||||| ||||| Sbjct 281633 AATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACTTCTAAAGTGATTGTCTT 281574 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || || || |||||||| Sbjct 281573 TCCTGTCAATGTTTTGACAAAAATCTGCAT 281544 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 ||| || ||| || ||||| || ||||| |||| || || | |||||||||| ||| Sbjct 281291 ATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCCTCTAATTG 281232 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||||| |||||||| ||||| ||||| ||| ||||| || ||||| ||||| ||||| Sbjct 281231 CTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTT 281172 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| ||||| | || || |||||||| | ||| ||||| | |||||| ||||| || || Sbjct 281171 TGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGTCTTTCCTGT 281112 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||| || |||||||| Sbjct 281111 CAAAGTCTTAACAAAAATCTGCAT 281088 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 |||||| ||| |||||||| || ||||| |||| ||| || | ||||| |||| ||| Sbjct 281519 ATGTAAAGTGGACTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCATCTTCTAATTG 281460 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||||| || ||||| ||||||||||| ||| ||||| |||||||| ||||| ||||| Sbjct 281459 CTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATCTTGAATCTT 281400 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| ||||| | || || |||||||| | ||| || || | |||||| ||||| ||||| Sbjct 281399 TGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAAAGTGATTGTCTTTCCCGT 281340 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || || |||||||| Sbjct 281339 CAATGTTTTGACAAAAATCTGCAT 281316 >seq25 Length=676938 Score = 149 bits (164), Expect = 1e-30 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| || ||||| |||| || || | || || || | |||||| || |||||| Sbjct 542043 TCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAG 542102 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| ||||| ||| || ||||| || |||||||| |||||||||||||| | Sbjct 542103 ATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTC 542162 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || |||||||| |||| ||| ||||| | ||||| ||||| || || ||||| || || Sbjct 542163 TCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACA 542222 Query 283089 AATATCTGCATTTTC 283103 || |||||||| ||| Sbjct 542223 AAAATCTGCATCTTC 542237 >seq4 Length=889257 Score = 122 bits (134), Expect = 2e-22 Identities = 314/475 (66%), Gaps = 10/475 (2%) Strand=Plus/Minus Query 273507 ATCTTACCTTTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCACCCTTCATC 273566 || || ||||||||| ||||||||| || |||| | ||||| ||||| || | | Sbjct 5309 ATTTTCCCTTTGAAAGATTTGTACCAGGGAGTCATTGGAACCATTATCTCACCTTTTAAC 5250 Query 273567 AGTCGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAA 273626 | || | || || |||||||||||| || ||||| | ||||| || ||| Sbjct 5249 ATTCTTTTCAAGTTCATAATAATATCTTTTGGATTGTAGTTAGGAACTGAACTACTCCAT 5190 Query 273627 CCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATAT 273686 || || || ||||| || |||||| || ||||| | || || ||||| |||||||| Sbjct 5189 CCTGTTCCTATACCATCAGTACCATTAACTAGAATCATTGGAATGATTGGAACATAATAC 5130 Query 273687 TCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCA 273746 |||||||| | | ||||| || || | ||| | || |||| |||||| | || Sbjct 5129 AAAGGCTCAATCTGTTGTCCATCATCATATAAGTAAGTTAATAAAGGATCATCAGCTTCT 5070 Query 273747 ACGAAAACCTTTCGCGTC--TGAGGATTCAGTTTCGTGAAAATGTACC---TGGCACTCG 273801 || | | || ||| | ||| ||||| || || || || | ||||| | Sbjct 5069 GGAAATATATATCTAGTCCATTTAGAT--AGTTTAGTAAATATATAACGAGCAGCACTTG 5012 Query 273802 CATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTA 273861 || ||||| ||||||| | || |||||| ||||| || || | |||| Sbjct 5011 CA---TCCTTTCCACCTTCCTTTCTACTACCAAATTGACCACATGGTTCTAATAAATTTA 4955 Query 273862 TGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCT 273921 || ||||| || || | | ||||||||||| || ||||| | || || || | Sbjct 4954 GATTATTGCTTCCAACAAAGTTTTGAGCCATATTTACTATAGTACTTTGTAGTGAAGATT 4895 Query 273922 CGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 | ||||| ||||| || || ||||| || | ||||||| || || ||||||| Sbjct 4894 CTCCGTGATGATAAGCACTATGTTCAGCAACATAACCAGCTAATTGTACAACCTT 4840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738837893658