Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1 194 2e-44 >seq1 Length=1292604 Score = 194 bits (214), Expect = 2e-44 Identities = 583/877 (66%), Gaps = 55/877 (6%) Strand=Plus/Plus Query 23219 TTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTT 23278 |||||||||| || || | |||| || ||||| || ||||| | | ||| ||| | Sbjct 164361 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 164420 Query 23279 CCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAATTCCTTT---- 23334 |||| |||| || ||||||||| ||| || | ||| |||| ||| Sbjct 164421 CCATCCAATCGAAGGGATTAGAAACATTGTAAA----TTTTGGGGATA--TCCAGAGCAA 164474 Query 23335 AAA--AGCCTATCTGCTACAAATTCAATATATTGACACATCAAATC-ATAGTTTATACCT 23391 ||| || ||||| ||||||||||||||||||||| ||| || || | |||| || || Sbjct 164475 AAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTAGAGTTCATTCCA 164533 Query 23392 ATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTT--TTCAATGGAAACAGCATCTT 23449 || || | || |||| | ||| | ||||| ||||| ||| | |||||| ||| Sbjct 164534 ATAAGATCAACAGGAAGTGAGTCACA-AAGAA-AGTTTCTTTCTACATCAACAGCTTCTG 164591 Query 23450 ---TAATTATTTGAACAATA--ACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAA 23504 ||||| ||| || || | || | || |||||| | | || | | Sbjct 164592 AGATAATTTGTTGTACTCTAGAAGTTGGTA-----GTTTATATTTAAGAGCTTTGTATAT 164646 Query 23505 TAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGT 23564 ||| || ||||| ||| ||||| |||||||| | ||||| | ||||||||| ||||| Sbjct 164647 TAAGCAAGCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGT 164706 Query 23565 TAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAA 23623 | ||| ||||| | ||| || ||||||| ||||||||| ||| |||| | | || |||| Sbjct 164707 AAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCA-CAAAAGCTACCAGAAA 164765 Query 23624 AGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATG---TTGCATTAT 23680 | | ||| || || ||||| || | | || | | |||| | || |||||| Sbjct 164766 AAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTTTCATTAT 164825 Query 23681 AATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAA 23740 ||| ||||||| ||| ||| | || ||| ||| || ||| || Sbjct 164826 --TCA----TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAA 164879 Query 23741 TTGCTTTTAAGAGAAAAGTTTT---TTCTTCATTATCTGTTATATATGTATCAATTAGTA 23797 | || | || || | ||| ||||| | || || |||||| | ||||||| | Sbjct 164880 TAGCCTCAAAAAGCA---TTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACA 164936 Query 23798 AACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAG 23857 | ||| ||||| |||||| | |||||||| || ||||| ||||| | ||| | Sbjct 164937 AGGAATATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTG 164996 Query 23858 CTTCAGACAATTGAACATCA-TTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 |||| | | || | || ||| |||| | ||| || ||||| ||||||||||| Sbjct 164997 CTTCTGGGATATGTATTTCTCTTAGGAAAT-TGACAGCCAAGTTTTCCATAACAATACCA 165055 Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAA- 23975 |||||||||||||||||||| || || ||||| ||||||||||| ||| || ||| Sbjct 165056 TCACTAGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCA-GGGTCTTTAAG 165114 Query 23976 TTTTTTCCAATCATTAATATCTTTTGATAAATCAA---CTTCATCAACTGTCCAAAAACT 24032 ||| |||||| || |||||| ||| |||| ||||| ||| |||||| Sbjct 165115 ACTTTCCCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAAC---CCAAAACGA 165171 Query 24033 TGCCAAGGCACGCTTATACATTAGCCAAATATCATTA 24069 ||| || |||||||| | ||||||||| ||| Sbjct 165172 TGCTTCTGCTTTTTTATACATAAACCAAATATCTTTA 165208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487823997800