Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq25 143 6e-29 seq18 143 6e-29 >seq25 Length=676938 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||| | || || || || ||||| | || || ||| |||||| Sbjct 542230 CAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCTTCAGAC 542171 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| ||||||||| ||||||||||| ||||| || || || || Sbjct 542170 ACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAACAG 542111 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || |||||||| | ||||| || |||||||| | ||||| || | Sbjct 542110 CGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTACAATATT 542051 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || |||| | || |||||||| ||| Sbjct 542050 CAAAAGGAGTCTACTTTGCACTTGGTATTGAGACTAAGA 542012 >seq18 Length=776017 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| | |||||||| || ||||| | || || ||| || ||| Sbjct 281547 CAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCGGAC 281606 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||||||| || || || ||||| || || || || ||| Sbjct 281607 ACAATTGAGAACGTTAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAACAA 281666 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || | ||||||||||| |||||| | ||||| || || Sbjct 281667 CGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAATATC 281726 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| || || | ||| | || |||||||| ||| Sbjct 281727 CAAAAAGAGTCCACTTTACATTTGGTATTGAGACTTAGA 281765 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| | || ||||| || ||||| | ||||| ||| || ||| Sbjct 281319 CAGATTTTTGTCAAAACATTGACGGGAAAGACAATCACTTTAGAGGTTGAACCATCGGAC 281378 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||| || || || ||||| || || || || ||| Sbjct 281379 ACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAACAA 281438 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || | ||||||||||| |||||| | ||||| || | Sbjct 281439 CGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAATATT 281498 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| || || | ||| | || || ||||||||| Sbjct 281499 CAAAAAGAGTCCACTTTACATTTAGTCTTAAGACTCAGA 281537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730783584238