Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq97 260 2e-64 seq45 190 2e-43 >seq97 Length=14183 Score = 260 bits (288), Expect = 2e-64 Identities = 1180/1855 (64%), Gaps = 38/1855 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||| || ||| | |||| || || | |||||| || || || ||||||| Sbjct 9755 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 9696 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||| || || |||||||| || || || | | | | | || | | ||| Sbjct 9695 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAAAGTTAGCATTTTCCATA 9636 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || ||||| | ||| ||| || || | | ||||| ||||||||||| | || Sbjct 9635 TGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGATT 9576 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAG 53046 | |||||||| ||| ||||||| |||||||||| | ||| | || | ||| Sbjct 9575 ACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGATT 9516 Query 53047 GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | |||| |||||| |||| || | | || || | | || | | |||| | Sbjct 9515 GTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATTTTGTTTAAGCCTGTCATCC 9456 Query 53105 CATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATGCGGATTAACTACTTGAAATTC 53160 |||| | | | | || || || | || | ||| ||||| ||||| |||||| Sbjct 9455 CATAG----CCCAAGTTCAAGCAAGTCATTGAGTAAATGAGGATTCACTACAAAAAATTC 9400 Query 53161 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 53220 ||||| | ||| || ||| || ||||| ||| | ||||| | | || || || Sbjct 9399 ACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTT 9340 Query 53221 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 53280 || || ||||| | || || ||||| ||||| || || | | | ||| | || Sbjct 9339 ACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAG 9280 Query 53281 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC---GGTAC 53337 || || | || | ||||| || | ||||| | ||||| | || || Sbjct 9279 CCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTT 9220 Query 53338 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 53397 ||| |||||||||||| ||||| ||| || || ||| || || Sbjct 9219 AACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTC 9160 Query 53398 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 53457 || || || || || || || || || ||||| ||||| | || | |||||||| Sbjct 9159 ATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAAC 9100 Query 53458 TTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGG-ATAATTTAAG 53515 ||| || |||| |||||||| | | | |||| | | ||| |||| ||| ||| Sbjct 9099 TTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTCTGAT-TCATATGGCATACG--AAG 9043 Query 53516 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 53574 | ||||| ||||| | ||||||||||||||| || | || | |||| | ||| Sbjct 9042 CATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGATT 8983 Query 53575 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCT 53634 ||| ||| | |||||| | || |||||| ||| | |||||| || | || || Sbjct 8982 TGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCCT 8923 Query 53635 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT----TGTCCATCTATTA 53690 ||| ||| | || ||||| | || ||| || ||| ||| |||| | Sbjct 8922 CGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTT-ATCTTTGT 8864 Query 53691 CAAACATGTTCA-ATG--CAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747 ||| | ||| | | |||| || ||||| |||||||| || | ||||| || | Sbjct 8863 CAACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAG 8804 Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807 || | ||| || || ||||| | |||||| | || || || ||||||| || | Sbjct 8803 TGTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGT 8744 Query 53808 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 ||||||| | || || ||||| || ||||| ||||| || |||||||| || | Sbjct 8743 TACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAG 8684 Query 53868 ATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT----CTTT 53923 || || || ||| | | ||||| || || ||| || | | Sbjct 8683 CTTGTAGGATTAAAAACCAAAGTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCCT 8627 Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 || ||||||| | ||| | | | |||||| || |||||||||| | ||| || Sbjct 8626 GCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCCC 8568 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 ||||||||||||||||| | | ||| ||| ||| | || || | | |||||| Sbjct 8567 CTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAAT 8508 Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 54103 |||||||||| |||||| || ||| || || | | ||| ||||| ||||| | Sbjct 8507 AGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGA 8448 Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 |||||| | | || | ||| ||| || ||| ||||||||| ||||| || || | Sbjct 8447 TTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCA 8388 Query 54164 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223 || | || ||||| ||| || || || || |||||||| || | ||||||||| Sbjct 8387 ATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACG 8328 Query 54224 CTCAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACT 54282 | ||||||||||| | ||||| || |||||||| ||| || ||||| || | Sbjct 8327 CGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGA-ATATACGAGCCCGT 8269 Query 54283 GGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 | | ||||||||| | || | || | || || || | ||| || ||| || Sbjct 8268 TCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCACA 8209 Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 | | ||| ||| ||| | || || |||||| ||| || || | |||| |||||| Sbjct 8208 TTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACA 8149 Query 54403 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 |||||||| | | ||| || | || || | ||||| | ||| || ||||| Sbjct 8148 AGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAA 8089 Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 | |||| || | || || || || |||| || | || ||||| | ||| || Sbjct 8088 ATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTAT 8029 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || | || | ||||| | || || ||||| || || |||||||| | ||| | Sbjct 8028 ACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCT 7969 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 54637 || | ||||| |||| |||||||| || ||||||| | ||| ||| ||| Sbjct 7968 GAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 7914 >seq45 Length=29048 Score = 190 bits (210), Expect = 2e-43 Identities = 607/921 (66%), Gaps = 39/921 (4%) Strand=Plus/Plus Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGA---CATAACTCCCATTTT 23845 ||| || || ||||||| ||| | | ||| |||||| ||||||||| | Sbjct 19111 TTAGAATTCTGCATCTAAGTCAAACTTTTGGTCATCTTGATTAACCATAACTCCAGCCAT 19170 Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905 ||| ||||| || || | ||||| || ||||| |||||||||| | ||| ||| || Sbjct 19171 TTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGATC 19230 Query 23906 CATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAA 23965 ||| ||||| | ||||| | |||||| || ||| | | ||| || ||| | Sbjct 19231 CATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGGAG 19290 Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025 |||||| || ||||| || |||||| ||| | | | | |||||||| ||||| | Sbjct 19291 TCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCCAATAAGATC 19350 Query 24026 AACTGGAAG--AGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 ||| ||||| || |||| |||||| | | ||| | | || || |||| ||||| Sbjct 19351 AACAGGAAGTGAGTCACA--AAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAATT 19408 Query 24084 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTAAACATCAAACATGCG 24140 | |||| | | | ||| | | || | | ||| | || || || || Sbjct 19409 TGTTGTACTCTAGA---AGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCAAGCA 19465 Query 24141 AAATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 || || ||| |||| || || || | ||||| | ||| || || || || ||||| || Sbjct 19466 AAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAGG 19524 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTC 24258 ||| || ||||||||||||||||||||||| | | |||| | | |||||||| | ||||| Sbjct 19525 CATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTACCAGAAAAAAGAATTC 19583 Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC---ATGTATCC 24315 ||||||| || || |||||| ||| || || || | || || || |||| Sbjct 19584 CTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTTTCATTATTCATCC 19640 Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 24375 | || ||||| || || |||||||| || || || ||||| | ||| | Sbjct 19641 ATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAAAAA 19700 Query 24376 G-AT---AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 | || | || ||| ||| || ||| |||| | ||||| || | ||| || Sbjct 19701 GCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATTAACAAGGAATATGTT 19756 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA-TCTAGCCTCGGTAAT 24490 || |||||| | ||||| |||||||||||| | || | ||| ||| || || | || Sbjct 19757 TCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATTCTTGCTTCTGGGAT 19815 Query 24491 CTGTACTTCT-ATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 |||| |||| || |||| | | || || ||||| | || || || ||||| || | Sbjct 19816 ATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAATACCATCACTAGCAG 19874 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGTTTATTCCA 24607 |||| || || | || | ||| ||||||| | | || ||| || || | | ||| Sbjct 19875 CAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCTTTAAGACTTTCCCA 19932 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 ||| | |||||| | || || | ||||| |||||| ||||| ||||| || Sbjct 19933 ATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTT 19992 Query 24668 TTTATACATATTCCAGATGTC 24688 |||||||||| ||| || || Sbjct 19993 TTTATACATAAACCAAATATC 20013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719551660480