Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq69 91.5 1e-13 >seq69 Length=29286 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || || | ||||| || || || || ||||| || ||| ||||| Sbjct 9223 AAGATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCT 9164 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| || | | || | || ||| ||| || ||||||||| | || ||| Sbjct 9163 TCAGACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGAT 9104 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 ||||| | || |||||||| || |||||| ||||||| | ||| | | |||||| Sbjct 9103 CAACAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTAC 9044 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| ||||| |||||| | ||| |||| || || || |||| || Sbjct 9043 AATATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGACTAAGAGGTGG 8994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428334559184780