Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq124 141 1e-28 seq69 140 5e-28 >seq124 Length=102498 Score = 141 bits (156), Expect = 1e-28 Identities = 175/239 (73%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 124533 AATACAAT---GCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATT 124589 |||||||| ||| || ||| | ||||| | ||||| || || || ||| | || || Sbjct 26309 AATACAATTATGCAGATTTTTGTTAAGACTTTGACAGGGAAGACAATCACTTTGGAAGTT 26368 Query 124590 GAAGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCA 124649 ||| || || |||||| ||| |||| || ||||| ||||| ||||| || ||| Sbjct 26369 GAACCATCGGACACAATTGAAAATGTAAAGGCAAAGATTCAGGATAAGGAAGGAATTCCA 26428 Query 124650 CCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAA 124709 ||||||||||| | | || |||||||| || |||||||||||| | |||| | Sbjct 26429 CCTGATCAACAGCGTTTAATCTTTGCAGGGAAGCAATTAGAGGATGGAAGAACTCTCTCT 26488 Query 124710 GATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||||||||| || || ||||||||||| || ||| | | |||||||||| Sbjct 26489 GATTACAATATTCAAAAGGAGTCCACTTTGCATTTAGTCTTAAGACTCAGAGGTGGTAT 26547 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || ||| | || || || || || ||| ||||| ||||| || Sbjct 26546 ATGCAGATTTTTGTCAAAACATTGACGGGAAAGACAATCACTTTAGAGGTTGAACCATCG 26605 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| |||| || ||||||||||| || || || |||||||||||| Sbjct 26606 GACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAA 26665 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || || |||||||| ||| | |||| | ||||| ||| Sbjct 26666 CAACGTTTAATCTTCGCGGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 26725 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || ||||| ||||| || ||| | | |||||||||| Sbjct 26726 ATCCAAAAAGAGTCCACTTTACATTTAGTCTTAAGACTCAGAGGTGGTAT 26775 Score = 127 bits (140), Expect = 3e-24 Identities = 172/236 (73%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || ||| | ||||| || || || ||| |||| ||||| || Sbjct 26774 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCG 26833 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| || |||| || || ||||||||||| || || || ||||||||||| Sbjct 26834 GACACAATTGAGAACGTTAAGGCA-AAGATTCAAGATAAGGAGGGAATTCCACCTGATCA 26892 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || ||||| || |||||||| ||| | |||| | ||||| || Sbjct 26893 ACAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAA 26952 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAA 124772 ||| |||||||| || ||||| |||||||| || | | ||||||| || |||| Sbjct 26953 TATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGACTTAGAGGTGGAATGTAAA 27008 >seq69 Length=29286 Score = 140 bits (154), Expect = 5e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || |||| || || || || || | || ||||| | Sbjct 9220 ATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCTTCA 9161 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| || |||||||| ||||||||||| |||||||||||| Sbjct 9160 GACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAA 9101 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||||||||| || || || | || || ||||| ||| Sbjct 9100 CAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTACAAT 9041 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 |||||||| || || |||||||| ||||| || | || |||||||| ||| Sbjct 9040 ATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGACTAAGAGGTGGTGTTA 8989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755453393676800