Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq69 91.5 1e-13 >seq69 Length=29286 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | ||| ||||||||||||| || |||||| ||||| ||||| || Sbjct 8994 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 9053 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | |||| |||| ||||||||| || || |||| |||||||| || || || Sbjct 9054 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 9113 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||| ||| || || | | | |||| | || || Sbjct 9114 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACT 9173 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||| || || ||||| || || | ||| || ||||| || ||||| || Sbjct 9174 TCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 9223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073871065796